Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4814g00046 ATGTCAAAGGTGCCGAATCGCGGAGACAAGGCAAAGGAAGAAGGTGAACACAAAAGCTATCCCGTGAAGTCCATGCCGACGATATTCCCAGATATCGATAGGGAGAAAGAGATGTCTGCAATGGTTTCAGCTTTGACCCACGTTGTTTCCGGAGAGTTGCCCTCTGATTATACGGCTTTTCATCAATACTCAACGTACCTGAACACAGTCGAAACTTCCGCGACACCATCTTCGACTTCTTCATTCTACGGTGCTAGCTCTGCTGCACCGACAGCTACGGAAGATGGCACCTTCTCACATATAGGTTCATCCTCATCCCCTGCTGTTCCAACAAATAGAGAAGGGAGGAGGGGGAGAAACGAAATGCCGGAAATGAGAAATGTTGTGTATGAATACAGAGCGGAGAATGGGAGGGAGCAGGGGAGAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAGTGGGCTGCAGAAATCAGAGATCCATTCAAAGCAGCGCGGGTGTGGTTGGGCACATTCGACACAGCAGAAGCCGCAGCCAGAGCATACGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCTAAGCTCAATTTCCCTGAAAATGTCACCCTTCGCCCCACTCCCCCAACTCTTCACAACCTGCAGGCTCCTCGCTATGGTCAGATTGATCACATGGTTTCACACTTTCAACCATCCCTAACGCCACCGGCAGCGTCGTCCTCCTCGTTTTCTGCCTTTGCTTCCACTGTTACCACACCTCCTTCGCCTTATCCTGCACAGACTCAAATGAGTGATTCTGAGTATTTAGTACCTTCATCGTTTTCTTCTGCCGGTTACACCTCCTTTTATTCTGGATGA 864 0.5012 MSKVPNRGDKAKEEGEHKSYPVKSMPTIFPDIDREKEMSAMVSALTHVVSGELPSDYTAFHQYSTYLNTVETSATPSSTSSFYGASSAAPTATEDGTFSHIGSSSSPAVPTNREGRRGRNEMPEMRNVVYEYRAENGREQGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRPTPPTLHNLQAPRYGQIDHMVSHFQPSLTPPAASSSSFSAFASTVTTPPSPYPAQTQMSDSEYLVPSSFSSAGYTSFYSG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4814g00046 287 Gene3D AP2/ERF domain 143 203 IPR036955 GO:0003700|GO:0006355
Pral4814g00046 287 CDD AP2 144 203 IPR001471 GO:0003700|GO:0006355
Pral4814g00046 287 MobiDBLite consensus disorder prediction 1 20 - -
Pral4814g00046 287 PANTHER DNA-BINDING DOMAIN 97 240 IPR044808 GO:0003700|GO:0009873
Pral4814g00046 287 MobiDBLite consensus disorder prediction 74 122 - -
Pral4814g00046 287 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Pral4814g00046 287 Pfam AP2 domain 144 193 IPR001471 GO:0003700|GO:0006355
Pral4814g00046 287 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
Pral4814g00046 287 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Pral4814g00046 287 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Pral4814g00046 287 MobiDBLite consensus disorder prediction 74 111 - -
Pral4814g00046 287 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
Pral4814g00046 287 MobiDBLite consensus disorder prediction 1 28 - -
Pral4814g00046 287 FunFam Ethylene-responsive transcription factor 2 143 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4814g00046 Pral-Chr4814 202974 204284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4814g00046 142 215 AP2-EREBP Transcription Factor Family AT2G33710 72.152 3.27e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4814g00046 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4814g00046 - - pcin:129319888 408.683