Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4810g00001 ATGAGAAAACCCAAATCAAGGCGCTTACACAAGCAGCAACGGCTTGCAGAGGAAGATGAGATTAAACTGTTGGATTCATGGATTCAATCCCAGAAACCAGACTCTGGATCCAACCCCATGTCATTTCCCCCTTTGTCCTCCAAAGAGCCTATAGGTTGCATTGATAGCAATACATTCTCGCGATATGCGGGTGTCACGAGGTTTGATCAGTTGCCAATTTCCAAGAAAACTAAGGATGGATTGTTAGAAGCCAAGTTTGTTAAGATGACCGACATACAGAGGGCATCTTTGCCCCATGCACTTTGTGGGCGAGATATTTTGGGTGCATCTAAAACTGGGTCGGGAAAAACCTTGGCTTTCATTGTTCCGGTCTTGGAAAAGTTATATAGAGAGAAGTGGGGCCCTGAAGATGGGGTAGGCAGCATCATCATATCTCCTACAAGAGAATTAGCTAGTCAGCTGTTTGATGTTTTAAAAAGTGTTGGTAAGCACCATAATTTCAGTGCTGGCCTGCTGATTGGTGGTCGCAAGGAAGTTAATGTGGAGAAAGAACACGTAAATGATCTGAACATTTTGATCTGCACACCTGGTCGCCTTCTACAACACATGGATGAAACTCCAAATTTTGATTGCTCACAGATTCAGGTGTTGGTGCTAGATGAGGCAGATCGGATTCTTGACAGTGGATTTAAGAAGGAACTAAATGCGATAATATCACAGCTTCCAAAGCATAGACAAACCCTACTCTTCTCGGCAACTCAAACGAAATCTATTGAAGTTCTTGCAAGACTAAGTTTAAAGGACCCAGAGTATCTGAGTGTCCATCAAGAGTCTGTGACTGCCACCCCTACTCTCTTGAGACAGCTTGTGATGATTGTTCCTCTGGACCAAAAGTTAGATATGTTGTGGAGTTTCATAAAGTCACATCTAAACTCCAAAATACTCGTTTTTCTCTCTAGCTGTAAACAGGTAACATTTGTTTTTGAAGCATTTAAGAAACTTCGTCCTGGCATACCCTTGAAATGTCTTCATGGGAGGATGAAGCAGGAAAGAAGAATGGGAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTACTCTTCTCAACTGATGTGGCTGCAAGAGGGCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAACGTAGCATCTTACATACACAGAGTTGGGAGAACTGCTCGCTACAAGTCCGGGGGTAGATCAGTTTTATTTTTGATGCCTTCAGAGATGAAAATGCTTGAAAAATTAGAAGCAGCTAAAGTTCCGGTACATCTTAATAAGCCTAGGAAGGAAAAACTGCAGCCAGTTTCTGGTTTATTAGCAGCATTACTGGTCAAGTACCCAGACCTCCAGCAATGGGCAAAAAGGGCCTTCATAACATATTTGAGATCCATTCATATCCAGAAGGATAAAGAAATCTTTGATCTTATGAAATTGCCGATTGATGAATATTCAGCATCATTAGGTCTGCCCATGACCCCCAAAACCCGATTTCTTAACCAAAAAATTAAATCTAAAGCTGTGCCAGCAAAACCAGTTTTAGCTGAACCAGAAGATTCTGACAGAGAAATTACATTAGAGGTTCCAAGAAAGAATCTGGATGTTAATGGTCCTGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAAAAGGTCTTCTTTTGCCAGACGATTCCTCTGATGAAAGGGAAGGGAGAGCACCAGAAATTGTAGATGTCATACCACCAACCCGTGTTTCAAAGAAAAAGAAGCTCAAGATCAACATACATAGACCAATGGGGACTAGGGTTGTATTTGATGATGAAGGTAATGCTCTTCCTCCACTGGCGAGAATTGCTGATACACAGACTGGCAAGGAAACATTGCTGCTTGATCCAGAGCAAAAAGCTGAATACTACAGAAAGATGCGTGAGGAGTTGAAAAAGGTTGACAAGGAAGACAAGCTTGTGCAACAACAGCGTCGAAGAGAGAAGAAAATCAAGCAAAAGATGAAGTGGAAGGAAAGAGGTGCTGAAGAGGATGATGATGACATTTCTGGGTCAGAAGATGGAGATGAAGTTGCAGATAGAAGGAGGCATAAAAAGAGCAAGATATATTTTGATAGCGACAGTGATGATGACACTAAAGGAACTGAAGTCGCAGGAGGGGAAGAGGGTATTATCTCTAAGCCTGTTACTTTGGAGGAGCAAGAAGCCTTGGCTTTGAAGTTGTTAAATTCCATGCACTCATAG 2268 0.4206 MRKPKSRRLHKQQRLAEEDEIKLLDSWIQSQKPDSGSNPMSFPPLSSKEPIGCIDSNTFSRYAGVTRFDQLPISKKTKDGLLEAKFVKMTDIQRASLPHALCGRDILGASKTGSGKTLAFIVPVLEKLYREKWGPEDGVGSIIISPTRELASQLFDVLKSVGKHHNFSAGLLIGGRKEVNVEKEHVNDLNILICTPGRLLQHMDETPNFDCSQIQVLVLDEADRILDSGFKKELNAIISQLPKHRQTLLFSATQTKSIEVLARLSLKDPEYLSVHQESVTATPTLLRQLVMIVPLDQKLDMLWSFIKSHLNSKILVFLSSCKQVTFVFEAFKKLRPGIPLKCLHGRMKQERRMGIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGRSVLFLMPSEMKMLEKLEAAKVPVHLNKPRKEKLQPVSGLLAALLVKYPDLQQWAKRAFITYLRSIHIQKDKEIFDLMKLPIDEYSASLGLPMTPKTRFLNQKIKSKAVPAKPVLAEPEDSDREITLEVPRKNLDVNGPEEEEEEEEEEEEKGLLLPDDSSDEREGRAPEIVDVIPPTRVSKKKKLKINIHRPMGTRVVFDDEGNALPPLARIADTQTGKETLLLDPEQKAEYYRKMREELKKVDKEDKLVQQQRRREKKIKQKMKWKERGAEEDDDDISGSEDGDEVADRRRHKKSKIYFDSDSDDDTKGTEVAGGEEGIISKPVTLEEQEALALKLLNSMHS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4810g00001 755 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Pral4810g00001 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Pral4810g00001 755 Pfam DEAD/DEAH box helicase 90 259 IPR011545 GO:0003676|GO:0005524
Pral4810g00001 755 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Pral4810g00001 755 MobiDBLite consensus disorder prediction 27 47 - -
Pral4810g00001 755 MobiDBLite consensus disorder prediction 655 735 - -
Pral4810g00001 755 Coils Coil 645 665 - -
Pral4810g00001 755 Gene3D - 54 278 IPR027417 -
Pral4810g00001 755 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Pral4810g00001 755 SMART DUF4217_3 447 510 IPR025313 -
Pral4810g00001 755 PANTHER RNA HELICASE 64 561 - -
Pral4810g00001 755 Pfam Domain of unknown function (DUF4217) 452 507 IPR025313 -
Pral4810g00001 755 MobiDBLite consensus disorder prediction 527 549 - -
Pral4810g00001 755 Gene3D - 284 522 IPR027417 -
Pral4810g00001 755 CDD DEADc_DDX10 77 275 - -
Pral4810g00001 755 MobiDBLite consensus disorder prediction 696 725 - -
Pral4810g00001 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 446 IPR001650 -
Pral4810g00001 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 428 IPR027417 -
Pral4810g00001 755 MobiDBLite consensus disorder prediction 550 567 - -
Pral4810g00001 755 MobiDBLite consensus disorder prediction 28 44 - -
Pral4810g00001 755 CDD SF2_C_DEAD 286 417 - -
Pral4810g00001 755 SMART helicmild6 322 408 IPR001650 -
Pral4810g00001 755 SMART ultradead3 85 289 IPR014001 -
Pral4810g00001 755 MobiDBLite consensus disorder prediction 522 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4810g00001 Pral-Chr4810 24903 32123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4810g00001 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 28.649 4.56e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4810g00001 K14776 - gmx:100792106 1116.29