Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4808g00069 ATGAGGTCCTACTGTCATTGTCTGAGTGCCCAACTGTTGCCCTTGTCTCGTAGTGAGATTCTGCTGGAGTCAGTGCAAAGGATTGGCTTCGTCAAAACAGTGACACGGCGTATCTTACTTGAGTTCCATAACGCCCCCTTCAACCCCGTGTGCGAATTGTGTACACAGCTGGCACTTCCCTGCCACGTCACCCCCAAACCGTATATATGCCCCTCGCTCCTTTCCCCTCCTCCTAGCTTGGTAGCTTCTCCGCATTCACAATCAGCCGTCATTCTTATCCTCTCTCACTTTTCGCACTCTTTCACTCCTCTCCGGCTCTCCCCCATGTCCTCCAACACCCCATCCAGGCTCCTTCCCCCCTCCTCTTCCTCTTCCTCCTCCTCCTCCGCCTCCTTCTCTTTTCGTCCGCCCACCGCCCTCCCTCCCGACCAAGAACTCTCCGTCATCGTCGAAGCACTCACGAACGTCGTCCTTGGCTCCACCGCTGATCTCACCCATCGCTTCCCCTCACCCTATTCCTCTTCCGCAGCCGGAATCCTACACAATGTCGACCACGGGGCGCCAGCCCTGACGACTGCTGAAGCAGGCCGCCCTGATTTCGGAGTGGCCTCCTGCTCGGGCTCCAAGTCTTTACCAGAAGAGAAGACCAAGAATGCAGGGAACAAACAGCCGCAGAAGGGGGGGGCGAAGAAGTACAGGGGAGTGAGGCAGAGGCCCTGGGGCAAATGGGCGGCTGAGATTCGAGATCCGAGACGGGCGACCCGGGTGTGGCTGGGAACCTTCAAGACAGCCGAGGAAGCAGCTCACGCTTACGACAAAGCGGCCATCGAGTTCCGCGGGCCCCGCGCCAAGCTGAACTTTCCTTTCTCTGATGACTCGTTGCTGAATTTGCAGGCCACTCAGCCACCGGAAGCTCCCCCATTGGCTCAGCCGCCGGCGACAGTGCCGTCCGAGGCGGAGCCGGTGAATCCCGAGAATCCGAACATTGAAATGGAAGCGATAGTGCCCGACGATGGTGAATTCTGGGATGGGATTGGAAAAGAAGATTTGGAATGGTTGATGGATTTTGTCGAGGGAGACTCTTCGGACTCTGCTCCCGGAACTACTCAGAGCCGGTGA 1119 0.5773 MRSYCHCLSAQLLPLSRSEILLESVQRIGFVKTVTRRILLEFHNAPFNPVCELCTQLALPCHVTPKPYICPSLLSPPPSLVASPHSQSAVILILSHFSHSFTPLRLSPMSSNTPSRLLPPSSSSSSSSSASFSFRPPTALPPDQELSVIVEALTNVVLGSTADLTHRFPSPYSSSAAGILHNVDHGAPALTTAEAGRPDFGVASCSGSKSLPEEKTKNAGNKQPQKGGAKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFKTAEEAAHAYDKAAIEFRGPRAKLNFPFSDDSLLNLQATQPPEAPPLAQPPATVPSEAEPVNPENPNIEMEAIVPDDGEFWDGIGKEDLEWLMDFVEGDSSDSAPGTTQSR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4808g00069 372 MobiDBLite consensus disorder prediction 191 235 - -
Pral4808g00069 372 MobiDBLite consensus disorder prediction 112 135 - -
Pral4808g00069 372 PANTHER DNA-BINDING DOMAIN 197 309 IPR044808 GO:0003700|GO:0009873
Pral4808g00069 372 SMART rav1_2 231 294 IPR001471 GO:0003700|GO:0006355
Pral4808g00069 372 MobiDBLite consensus disorder prediction 304 318 - -
Pral4808g00069 372 SUPERFAMILY DNA-binding domain 231 290 IPR016177 GO:0003677
Pral4808g00069 372 MobiDBLite consensus disorder prediction 112 137 - -
Pral4808g00069 372 Gene3D AP2/ERF domain 230 289 IPR036955 GO:0003700|GO:0006355
Pral4808g00069 372 FunFam Ethylene-responsive transcription factor 2 230 289 - -
Pral4808g00069 372 ProSiteProfiles AP2/ERF domain profile. 231 288 IPR001471 GO:0003700|GO:0006355
Pral4808g00069 372 MobiDBLite consensus disorder prediction 299 326 - -
Pral4808g00069 372 CDD AP2 230 288 IPR001471 GO:0003700|GO:0006355
Pral4808g00069 372 PRINTS Ethylene responsive element binding protein signature 254 270 IPR001471 GO:0003700|GO:0006355
Pral4808g00069 372 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Pral4808g00069 372 Pfam AP2 domain 231 280 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4808g00069 Pral-Chr4808 462830 464232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4808g00069 230 288 AP2-EREBP Transcription Factor Family AT2G33710 83.051 2.78e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4808g00069 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4808g00069 - - pcin:129285371 328.176