Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4808g00056 ATGGCTCAGCCCACCAACACGGCGGATCTGAATCAGCACCAGCATCAGCAGCAGTGGACGACGCAGCAGCCGCATCACTATCAGCAGCAGTGGATGTCTATGCAGTACCCTGCTGCCGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCACAACATTACATGCCTTACGTCCACCATTATATGCCTCCTCACCAGCAGCAGCTCAAGCCGCAGCCATACCAGCAGCAGCAGCAGCAGAAGCAAGGGTCGTCCGATGAGATCAGGACTATATGGCTTGGTGACCTTCATCACTGGATGGATGAGAACTACCTCCATAACTGTTTTGCTTATACAGGCGAGGTTGTATCAGCCAAGGTTATACGAAATAAGCAAACTGGCCAGTCAGAGGGGTATGGATTTGTTGAGTTCTATTCGCGTGCAACCGCTGAGAAAGTTTTGAACAGCTCCAGTGGTACTATGATGCCAAATACCGATCAGCCCTTTCGTCTAAATTGGGCTACTTTCAGCGCGGGTGATAGGAGATCTGAAGCTACGTCTGATCTGTCTATATTTGTTGGGGACCTGGCTGTAGATGTTACTGATGCTATGCTGCATGAAACCTTCGCTGGCAGATATACATCTGTAAAGGGAGCCAAAGTGGTCATTGATTCAAATACTGGCCGTTCAAAAGGTTACGGTTTTGTAAGGTTCGGTGATGAAGCTGAGAGGTCCAGGGCCATGACTGAAATGAATGGATGCTATTGTTCTAATCGGCCTATGCGTATAGGTGTTGCAACGCCAAAGAAGTCCCATGGGTATCAACAACAATATTCTTCCCAAGCTGTAGTATTAGCTAATGGACATTCATCTAATGGAGCTACTACACAAGGTTCCCAGCCTGAAGGGGACTCAAATAACACAACTATTTTTGTTGGGGGTCTTGATTCTGATGTTAGAGATGACGATCTTAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCGGTCAAAATACCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCGCTTCAAGCATTGAACGGGACTGTGATTGGGAAGCAGACCGTACGTCTTTCTTGGGGCCGTAGTCCTGGAAATAAGCATTGGAGGACAGATTCCAATGGAGGACACTATGGAAGCCAGGGGTTTGCCATGAGACAAAACCAGGAAATCAGTATGAACGGTGCTGCTGCATTTCAAGGGGCATCCTGA 1245 0.4747 MAQPTNTADLNQHQHQQQWTTQQPHHYQQQWMSMQYPAAAMAMMQQQMMMYPQHYMPYVHHYMPPHQQQLKPQPYQQQQQQKQGSSDEIRTIWLGDLHHWMDENYLHNCFAYTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLNSSSGTMMPNTDQPFRLNWATFSAGDRRSEATSDLSIFVGDLAVDVTDAMLHETFAGRYTSVKGAKVVIDSNTGRSKGYGFVRFGDEAERSRAMTEMNGCYCSNRPMRIGVATPKKSHGYQQQYSSQAVVLANGHSSNGATTQGSQPEGDSNNTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHYGSQGFAMRQNQEISMNGAAAFQGAS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4808g00056 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Pral4808g00056 414 FunFam Polyadenylate-binding protein RBP47 284 399 - -
Pral4808g00056 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Pral4808g00056 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 367 IPR000504 GO:0003723
Pral4808g00056 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 159 IPR000504 GO:0003723
Pral4808g00056 414 SMART rrm1_1 303 370 IPR000504 GO:0003723
Pral4808g00056 414 SMART rrm1_1 184 258 IPR000504 GO:0003723
Pral4808g00056 414 SMART rrm1_1 91 166 IPR000504 GO:0003723
Pral4808g00056 414 MobiDBLite consensus disorder prediction 1 22 - -
Pral4808g00056 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 79 378 - -
Pral4808g00056 414 FunFam Polyadenylate-binding protein RBP47B 171 273 - -
Pral4808g00056 414 Gene3D - 53 178 IPR012677 -
Pral4808g00056 414 SUPERFAMILY RNA-binding domain, RBD 176 280 IPR035979 GO:0003676
Pral4808g00056 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 374 IPR000504 GO:0003723
Pral4808g00056 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
Pral4808g00056 414 Gene3D - 179 279 IPR012677 -
Pral4808g00056 414 SUPERFAMILY RNA-binding domain, RBD 59 172 IPR035979 GO:0003676
Pral4808g00056 414 Gene3D - 280 407 IPR012677 -
Pral4808g00056 414 SUPERFAMILY RNA-binding domain, RBD 292 393 IPR035979 GO:0003676
Pral4808g00056 414 MobiDBLite consensus disorder prediction 69 86 - -
Pral4808g00056 414 FunFam Polyadenylate-binding protein RBP47B 89 169 - -
Pral4808g00056 414 CDD RRM2_SECp43_like 182 261 - -
Pral4808g00056 414 MobiDBLite consensus disorder prediction 66 86 - -
Pral4808g00056 414 CDD RRM1_SECp43_like 91 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4808g00056 Pral-Chr4808 369372 373885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4808g00056 89 371 Eukaryotic Initiation Factors Gene Family AT2G23350 29.110 7.49e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4808g00056 - - gmx:100798089 600.127