Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4808g00046 ATGGGGAGGCCAAGGTGCTTCTTGGACATAAGCATAGGCGGAGAGTTGGAAGGGAGGATCGTGGTGGAACTTTACAGCGACGTCGTCCCCAAAACCGCTGAGAACTTCAGAGCTCTCTGCACTGGCGAGAAAGGCATTGCTCCCAACACTGGGCTACCCCTCCATTACAAGGGGTGTTGCTTCCATCGGATTGTTAGAAGCTTTATGATCCAAGGAGGAGACATATCTGCTGGAGATGGTACTGGTGGAGAATCTATATACGGGATGAAGTTTGAAGACGAGAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAATTCTGGCCCTAACACCAACGGGTCTCAGTTTCTTATTACCACTACTCGAGCTGCTCATCTTGATGGTAAGCATGTGGTGTTTGGGAAGATAGTAAAGGGAATGGGGGTAGTCCGTTCAATGGAGCTTGTTACTACTGGTGATGAAGGTCGCCCCATTATTGATGTTAAAATTGTGGACTGTGGAGAAATTCCTCAGGGAGCAGATGATGGAATATCTAACTTTTTCAAAGATGGTGATGCTTATCCTGATTGGCCGGCAGACCTCGATGAAAGCCCTAATGATCTCCATTGGTGGATGAATGCTGTTGATTCCATTAAAAATTTTGGTAACGACTACTTCAAGAAACAAGATTTTAAAATGGCTTTAAGGAAGTATCGGAAGGCTCTACGCTACCTTGATCTTTGCTGGGAGAAAGGAGTCGATGCTGACAAGAGTTCAAGCTTGAGAAAAACGAAGTCTCAGATTTTTTCAAACTGCTCTGCTTGTAAATTGAAGTTAGGGGATCTCAAAGGAGCATTATTAGACACAGAATTTGCAATGCGCGAAGCAGGCAATAATGTCAAAGCTTTGTTTCGCCAAGGGCAGGCATACATGGCGCTCCGTGACATTGATTCTGCGGTTGAAAGCTTCAAAAATGCACTAACCTTGGAGCCAAATGATGCTGGAATCAAAAAGGAGCTTGCTGCTGCCAGGAGGATGGTGAGGATTGCTGATAGACACGATCGGGAAAAGGATGCATGCAAAAAAATGTTTCAATAA 1089 0.4472 MGRPRCFLDISIGGELEGRIVVELYSDVVPKTAENFRALCTGEKGIAPNTGLPLHYKGCCFHRIVRSFMIQGGDISAGDGTGGESIYGMKFEDENFELKHERKGMLSMANSGPNTNGSQFLITTTRAAHLDGKHVVFGKIVKGMGVVRSMELVTTGDEGRPIIDVKIVDCGEIPQGADDGISNFFKDGDAYPDWPADLDESPNDLHWWMNAVDSIKNFGNDYFKKQDFKMALRKYRKALRYLDLCWEKGVDADKSSSLRKTKSQIFSNCSACKLKLGDLKGALLDTEFAMREAGNNVKALFRQGQAYMALRDIDSAVESFKNALTLEPNDAGIKKELAAARRMVRIADRHDREKDACKKMFQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4808g00046 362 SMART tpr_5 297 330 IPR019734 GO:0005515
Pral4808g00046 362 SMART tpr_5 263 296 IPR019734 GO:0005515
Pral4808g00046 362 SMART tpr_5 212 245 IPR019734 GO:0005515
Pral4808g00046 362 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Pral4808g00046 362 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Pral4808g00046 362 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Pral4808g00046 362 CDD cyclophilin_ABH_like 4 171 - -
Pral4808g00046 362 Gene3D Tetratricopeptide repeat domain 212 362 IPR011990 GO:0005515
Pral4808g00046 362 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Pral4808g00046 362 FunFam peptidyl-prolyl cis-trans isomerase D 210 362 - -
Pral4808g00046 362 Gene3D - 1 179 IPR029000 -
Pral4808g00046 362 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Pral4808g00046 362 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Pral4808g00046 362 Pfam Tetratricopeptide repeat 297 330 IPR001440 GO:0005515
Pral4808g00046 362 SUPERFAMILY TPR-like 209 342 IPR011990 GO:0005515
Pral4808g00046 362 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Pral4808g00046 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Pral4808g00046 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Pral4808g00046 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Pral4808g00046 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Pral4808g00046 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Pral4808g00046 362 ProSiteProfiles TPR repeat region circular profile. 297 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4808g00046 Pral-Chr4808 312601 315992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4808g00046 17 170 U-box Gene Family AT5G67530 45.161 1.77e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4808g00046 K05864 - gmx:100813496 610.912