Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4808g00045 ATGGGCTCGCTTCCTCCACCACAGCTGAGCTTGGATTTGAGACCCACTTTTGTTCCCAAGACGATCACTGATTTCCTCTACGAAGTTTCCACGATCGCCCATGCCTCCGATAAGCTCTCCAGGCTCGATGATTTCGTCAACAGATTGGAAGAGGAAATGAGGAAGATTGACGCCTTTAGGCGTGAGCTTCCTCTCTGTATGCTCCTCTTGAATGATGCAATTTTAGTTCTGAAGGAGGAATCGGCAAAATTCAGGATACCTGATTCTCAGCCAGTATTGGAAGAATTTATTCCCTTGAGGAAACAGTGTGATCAGAAGGAGGAAGATGAAACAGAAAAGGAATGCCGAGACAAGAAGAACTGGATGAGTTCTGTACAACTGTGGAACACTGATAGTTACCCCACCTGTGAACAAAAAGAACGTTATAAATTAGAAAACAAGAAAAATGAAGAACCCACTGTGGCAGAGGATCCTTTGAAATCTTGTAGAAATAGAATTGGAAGGAGGGTTTTTATGCCTTTTGCATCATACAGTCCAGTTCATGTGACAACTGTGGCAACCAAGGAAGAAATGGAAGAGTCTGATATTAATGGACTTTCTCTTGTCACTCCTGGAGTTAAAAATCTGAGGGAGGGGTCTGTTTCTAGCGGATCAAGAATATCGTCTGGCAGGGCGGTTTCATCGCCTCCTTGCAGTGACCAACCAAGTTTACGCACTGGACAGCATCAGACTGCTCGGAAACAAAGAAGGTGTTGGTCACCAGAGCTGCACCGTCGATTTGTCAATGCCCTGCAGCAACTTGGAGGTTCTCAAGCTGCCACTCCAAAGCAAATTAGAGAACTCATGCAAGTTGATGGCCTGACCAACGATGAAGTGAAGAGCCATTTACAAAAATACCGACTTCATACCCGAAGACTTCCAGCTTCCACAGCTACTCCTGGTGACCAGTCTGTTGTAGTTCTCGGGAGTTTATGGATGTCCCAAGATCAATATAATGACTCCTCCAAGGGTATCGTTTCAGGGTCTGGCTCTCCTCAAGGTCCCCTCCAGTTAACCTCAGGATCTGGAGGAGGAATGTCCCAAACTGAAGATGACAGCATGGAAGATGATGATGATGAAAAATCCGAGAGCGATAGATGGAATGGTGAAATCCATAAACCTGGAAAAAATGATGTATAG 1179 0.4521 MGSLPPPQLSLDLRPTFVPKTITDFLYEVSTIAHASDKLSRLDDFVNRLEEEMRKIDAFRRELPLCMLLLNDAILVLKEESAKFRIPDSQPVLEEFIPLRKQCDQKEEDETEKECRDKKNWMSSVQLWNTDSYPTCEQKERYKLENKKNEEPTVAEDPLKSCRNRIGRRVFMPFASYSPVHVTTVATKEEMEESDINGLSLVTPGVKNLREGSVSSGSRISSGRAVSSPPCSDQPSLRTGQHQTARKQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPASTATPGDQSVVVLGSLWMSQDQYNDSSKGIVSGSGSPQGPLQLTSGSGGGMSQTEDDSMEDDDDEKSESDRWNGEIHKPGKNDV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4808g00045 392 Pfam Myb-like DNA-binding domain 249 300 IPR001005 -
Pral4808g00045 392 FunFam Myb family transcription factor 246 304 - -
Pral4808g00045 392 MobiDBLite consensus disorder prediction 377 392 - -
Pral4808g00045 392 Coils Coil 32 62 - -
Pral4808g00045 392 MobiDBLite consensus disorder prediction 333 392 - -
Pral4808g00045 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 379 IPR044787 GO:0003700|GO:0006355
Pral4808g00045 392 Gene3D - 246 304 - -
Pral4808g00045 392 MobiDBLite consensus disorder prediction 333 362 - -
Pral4808g00045 392 MobiDBLite consensus disorder prediction 210 242 - -
Pral4808g00045 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 304 IPR017930 -
Pral4808g00045 392 NCBIfam myb-like DNA-binding domain, SHAQKYF class 247 302 IPR006447 GO:0003677
Pral4808g00045 392 SUPERFAMILY Homeodomain-like 244 305 IPR009057 -
Pral4808g00045 392 MobiDBLite consensus disorder prediction 210 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4808g00045 Pral-Chr4808 301572 304601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4808g00045 8 326 G2-like Transcription Factor Family AT2G03500 37.941 6.44e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4808g00045 Myb_DNA-binding 6.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4808g00045 - - qsa:O6P43_011684 502.286