Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4808g00042 ATGGATCGGTCGACGATCACAGTTGGGCCGGGGATGGATATGCCGATTCTGCACGACAGTGACCGCTACGAGCTCGTGCGTGATATTGGGTCTGGAAATTTTGGGGTCGCGAGGCTTATGAGGGACAAGCAAACAGACGAGCTTGTTGCTGTGAAGTACATAGAGAGGGGAGATAAGATAGATGAAAATGTGCAAAGGGAAATCATAAATCACAGATCACTTAGGCACCCCAATATTGTCAGGTTCAAGGAGGTCATATTGACACCAACACATCTGGCTATCGTGATGGAGTATGCTTCTGGAGGAGAGCTATTTGAACGAATATGCAATGCTGGGCGGTTCAGTGAGGATGAGGCTCGTTTCTTTTTCCAACAACTAATATCGGGGGTTAGCTACTGTCATGCAATGCAAGTATGCCATCGGGACTTGAAGTTGGAGAACACTCTATTGGATGGTAGCCCAGCTCCTCGTTTGAAAATATGTGATTTTGGGTACTCCAAGTCCTCTGTGCTACATTCACAACCAAAATCTACAGTTGGTACTCCAGCTTATATCGCTCCAGAAGTTTTGCTTAAGAAGGAGTACGATGGCAAGATTGCAGATGTATGGTCCTGTGGGGTGACTTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGACCCAGAGGAACCAAAAAATTTCCGCAAGACGATACATAGGATTTTGAATGTTCAATACTCAATTCCCGACTATGTTCATATATCTCCTGAATGCCAACATCTCATCTCAAGGATCTTTGTTGCTGACCCTGCAAAGAGGATAAGCATCCCTGAGATCAGAAACCATGAATGGTTTCTGAAAAACCTTCCAGCTGATCTTATGGATGATCCTAGTACAACGAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAGAGCATAGAGGAAATCATGCAAATAATTTCTGAAGCTACAATTCCTGCAGCTGGGACTCAGTCTCTCAACAACTATCTCACTGGAAGCTTAGATATTGATGACGACATGGAGGAGGACCTGGAGTCTGATCCTGATCTTGACGTCGATAGCAGTGGAGAAATAGTGTATGCAATTAATCCTGATTTTTAA 1107 0.4435 MDRSTITVGPGMDMPILHDSDRYELVRDIGSGNFGVARLMRDKQTDELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECQHLISRIFVADPAKRISIPEIRNHEWFLKNLPADLMDDPSTTNNQFEEPDQPMQSIEEIMQIISEATIPAAGTQSLNNYLTGSLDIDDDMEEDLESDPDLDVDSSGEIVYAINPDF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4808g00042 368 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Pral4808g00042 368 PANTHER SERINE/THREONINE KINASE 22 310 - -
Pral4808g00042 368 CDD STKc_SnRK2-3 22 278 - -
Pral4808g00042 368 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4808g00042 368 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4808g00042 368 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Pral4808g00042 368 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4808g00042 368 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
Pral4808g00042 368 SUPERFAMILY Protein kinase-like (PK-like) 16 321 IPR011009 -
Pral4808g00042 368 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Pral4808g00042 368 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Pral4808g00042 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4808g00042 Pral-Chr4808 279931 283947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4808g00042 22 283 CBL-interacting serine-threonine protein kinases AT5G25110 45.255 1.32e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Pral4808g00042 Pkinase 4.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4808g00042 K14498 - qsu:112032862 672.544