Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4808g00028 ATGCCGCGACCTTGCTTTCACAAGCTTATTTGTCCCTCCACGCTCCAATCCCGGCAGCTGACTATTCCAGACAATTTTCTGAGAAAATTTGGGGGTGAGCTTTCTACAGTTGCTACCCTCACTGTTCCAGATGGCAGTGTCTGGCGAGTAGGGTTAAAAAAATTGGGCAACAGATTTTGGCTCCTCGATGGCTGGCAGGAATTTGTTCAGCGCTACTCCATTGACGTTGGTTACTTGCTGGTATTCAGATATGAAGGGAAATCATCGTTCAATGTTCATATTTTCAATTTGGCTACTTGTGAGATAAATTACCAATCAAACACACGAAGCAGTAATGAAGGGACTTTCTTTCCAAATCAACATCTTAATTTTGATGATATTGAAGATGAAGACGACTACATTGAATTCTTAGATTCATCACCTTCGTCCCTTACTCCTGGTGCATTGCAGAACAAGGCTTTTCCTGGAACTCCTGCGTTGCAGAATTTGTTCCATGGGTCTAAACTTAACTCCATAAACTGGGGAGATGGGGGGAATTCGCTTCCTCCCAATGGTGCCAATTCTCAAGAAAATCAATCAAGCAGAAATATAGGTGTTCAGTTTAATGCGGTCGAGTTCAAAAAGTCTACTGAAGAGCTAAAATTGCGTTTCTCCAATGAGGAAACGCAAAGAGTTAAAAAAACTATAAGAAAGAAGCGGAAAATGGATCCTAATGGACAAGAACCCTCAGCTCAACATGAACAAGAGGGGGACATACGCTATAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCTGAAGAAAGAGAAAGGGCAATTAATTCAGCAAAAGCATTTGAACCGGCCAATCCTTTCTGTCGTGTTGTCCTGCGACCCTCCTATTTATACAGGGGATGCATAATGTATTTGCCATCCTGTTTTGCAGAAAAGCATTTGAATGGGGTTTCAGGATTCATTAAACTCCAGATCTCCGATGGAAAACAGTGGCCTGTTCGCTGCCTTTACAGAGGAGGAAGGGCAAAGTTAAGCCAAGGCTGGTTTGAATTTTCACTGGAAAACAATTTGGGCGAAGGGGATGTCTGTGTTTTTGAACTTCTTAGAATGAAGGAAGTAGTATTGAAAGTTACTATATTTCGTGTCACTGAGGATGCAGGATTGATGAGCCCTCCTATACATCAACACCAAAACGTCAGCCCGACTAAACTGTTGAATACTCCTATGCCACAAACCATCATCCCAGCGAAACTGATGAGAAACTAG 1269 0.4216 MPRPCFHKLICPSTLQSRQLTIPDNFLRKFGGELSTVATLTVPDGSVWRVGLKKLGNRFWLLDGWQEFVQRYSIDVGYLLVFRYEGKSSFNVHIFNLATCEINYQSNTRSSNEGTFFPNQHLNFDDIEDEDDYIEFLDSSPSSLTPGALQNKAFPGTPALQNLFHGSKLNSINWGDGGNSLPPNGANSQENQSSRNIGVQFNAVEFKKSTEELKLRFSNEETQRVKKTIRKKRKMDPNGQEPSAQHEQEGDIRYRFYESASARKRTVTAEERERAINSAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGKQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLKVTIFRVTEDAGLMSPPIHQHQNVSPTKLLNTPMPQTIIPAKLMRN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4808g00028 422 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Pral4808g00028 422 MobiDBLite consensus disorder prediction 234 250 - -
Pral4808g00028 422 Gene3D - 266 386 IPR015300 -
Pral4808g00028 422 MobiDBLite consensus disorder prediction 220 250 - -
Pral4808g00028 422 SMART B3_2 289 384 IPR003340 GO:0003677
Pral4808g00028 422 SMART B3_2 6 98 IPR003340 GO:0003677
Pral4808g00028 422 Gene3D - 1 100 IPR015300 -
Pral4808g00028 422 CDD B3_DNA 4 96 IPR003340 GO:0003677
Pral4808g00028 422 SUPERFAMILY DNA-binding pseudobarrel domain 282 383 IPR015300 -
Pral4808g00028 422 CDD B3_DNA 287 382 IPR003340 GO:0003677
Pral4808g00028 422 ProSiteProfiles B3 DNA-binding domain profile. 289 384 IPR003340 GO:0003677
Pral4808g00028 422 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pral4808g00028 422 PANTHER B3 DOMAIN-CONTAINING 3 372 - -
Pral4808g00028 422 Pfam B3 DNA binding domain 292 383 IPR003340 GO:0003677
Pral4808g00028 422 Pfam B3 DNA binding domain 7 95 IPR003340 GO:0003677
Pral4808g00028 422 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4808g00028 Pral-Chr4808 169195 172677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4808g00028 1 388 B3 DNA Binding Superfamily AT3G18990 52.778 4.23e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4808g00028 B3 2.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4808g00028 - - gmx:100813285 625.55