Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4808g00027 ATGGATAAGCAAAAGAACGTCTCAGCTCATGAGTATCCTGAATTCTTCGAAGTATTCCTCCCTAAATACAACTCGGAAAGGATGCGTATCCCGAATGCTTTTGTCAAATGTTTACGTGAGAAAGTGTTAAAGAAAGCCATCCTCAAGAATCGTAGGGGCAAGATGTGGCATGTCAACGTAAGCAACATTAATGGCGGCCTGTATTTTGACCATGGTTGGCAGCAGTTTACCAAGGACAATTCCTTAGAGGTTGGATACTTCATGATCTTTTCATTTGATGGAAGTAATACGTTCAAATTCAAAATCTATAAAACAAATCGTTGTGAAATGATTGAGACCTATGAAGAAAAGGAAGAAGATAAAGAAAATGATTCTGTAGAGGAGGTAGAGGAGGAGGAGGAAGATGATGAAGATGAGGATGAGGATGCAGATGTTAAAGAAGAGAAGGGTGAACAAGTCAAGAATAGAAGAGGTTCTTCGTCCAAGGCTAAACCAATTAGCCTTGTGGATTATGGAATTGATGCGGAGATGTATGTTGAGCCAGACAATCCCTACTTCGCAACAAAAATAGGAGGAAATAGGACAAACGAGCTGTTGCTCAACTATTTTTGGTTAATTAAGCGCCTTCCAAAGCATGAAGTGCAAGAACACCATCAAGAACAAGGAGCTTTTCAAACCCAAGACAGAAGCACATGTGAAGGGGAAGTGATCAAATGGAAAGATGGAAGATTGTGTATCAGAAAGTGGGCTTCGTTTTGCAGACGCAATGGGATCACCAACACTGACGTTTGTCTCTGTGAATTTCTGTTGGGAGACGACGGACAACCTCATACATTAGAGGTTCACATTGTTGGGATTCAGGCCTAA 867 0.4106 MDKQKNVSAHEYPEFFEVFLPKYNSERMRIPNAFVKCLREKVLKKAILKNRRGKMWHVNVSNINGGLYFDHGWQQFTKDNSLEVGYFMIFSFDGSNTFKFKIYKTNRCEMIETYEEKEEDKENDSVEEVEEEEEDDEDEDEDADVKEEKGEQVKNRRGSSSKAKPISLVDYGIDAEMYVEPDNPYFATKIGGNRTNELLLNYFWLIKRLPKHEVQEHHQEQGAFQTQDRSTCEGEVIKWKDGRLCIRKWASFCRRNGITNTDVCLCEFLLGDDGQPHTLEVHIVGIQA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4808g00027 288 SUPERFAMILY DNA-binding pseudobarrel domain 10 108 IPR015300 -
Pral4808g00027 288 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Pral4808g00027 288 SUPERFAMILY DNA-binding pseudobarrel domain 180 285 IPR015300 -
Pral4808g00027 288 Pfam B3 DNA binding domain 15 104 IPR003340 GO:0003677
Pral4808g00027 288 PANTHER B3 DOMAIN-CONTAINING 8 271 - -
Pral4808g00027 288 SMART B3_2 15 106 IPR003340 GO:0003677
Pral4808g00027 288 Gene3D - 173 286 IPR015300 -
Pral4808g00027 288 Coils Coil 111 139 - -
Pral4808g00027 288 CDD B3_DNA 13 104 IPR003340 GO:0003677
Pral4808g00027 288 MobiDBLite consensus disorder prediction 115 146 - -
Pral4808g00027 288 Gene3D - 6 108 IPR015300 -
Pral4808g00027 288 MobiDBLite consensus disorder prediction 114 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4808g00027 Pral-Chr4808 164998 166429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4808g00027 13 283 B3 DNA Binding Superfamily AT3G06160 27.907 2.02e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4808g00027 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4808g00027 - - pcin:129286072 206.068