Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4806g00006 ATGGCTTCAAGTTCCGATTCCGCGCCTTCGCCTGATTCATCTTCCTCGGATTCTCCTCCGTCACCACCGCCACCGGATTCAAGTTCATCTGACGATTCTTCTTCCTCTCCGCCACCACAACCCCCTCCTCCACCATCCGACGACCAATCACCCCCACCGCCACCCGACCAAGACAATGGTGGAGACAGCAATAACTCATCTCCTCCCCCTCCTCCACCTTCTAATGGCAACGATAACAGCGATGGAAATAACAGCAAAACGGGGAGCCCTCCGCCTCCACCACCGCCAGCGAATGCCAAGGGAGGAGAGTTTTCACCTCCGCCGCCAGTACACCGGTTGTCTCCTCCGGAGAAAAGTTCACATGGATCATCGGACAATCCATCACCGTCGTCAGGTAGCAATAGCGATGGATCTCAATTGAGCGTACCAGCTATCATTGGTTTGGCAGCTGGAGCTGGTTTGTTGCTGCTTGTGTTCATCCTCATCTTCATTGCATGCAACAGAAGGAAGAAGAGGAGATCTGAGGGTCCCATTATTTACTACGCCAACAAAAAATTTGAAAAAAATCATATGGACGTACTTAGGGTAATAAATAATGGCCATGTTTTTGAGAGAGATTTCAACGAGGGAAAAATTTATGGTGACCAATGTATGAACAAATTTGGGGAGACGCATGCAGATGATGACTATTACAAGCAGGCGAATAAGGGAAACAATTGGAACAATACTGGTTATAACACTGGTGATCAACACGTTATGAATATGCCAACACCCCCAGGAGCAATGGGAGGAGGCGTGAATAAATCTCCTTGGGGAGCACCGCCGGCTCCATTCTCTGGGAATATGAACAGCGGTGAGATGAGCAGCGCGAGCTATTCAGGGCCGGTGGGTCCACCGCAGCCTCCCCCACACCCTTCGGTGGCGCTAGGGTTCAACAAGAGCACCTTCACGTACGAGGAGCTAGCGGCTGCAACTAGTGGTTTTGCCCAAGCGAACCTACTGGGACAAGGTGGATTCGGGTATGTGCACAAAGGAGTGCTTCCCAACGGCAAGGAGATAGCCGTGAAGAGTCTCAAGTCGACCGGAGGCCAAGGTGACAAAGAGTTTCAAGCTGAAGTTGATGTCATCAGCCGAGTCCATCATCGCCATCTCGTTTCTCTTGTTGGTTATTGCATTCAAGAAGGCCGTAGTCTCTTGGTCTACGAGTTTGTGCCCAACAAAACTATGGAATACCATCTTCACGGGAAGGACCGACCTGTTATGGACTGGCCTACTAGGCTCAAAATTGCAATTGGATCGGCCAAGGGACTTGCTTATTTGCACGAGGATTGCCACCCTCGAATCATCCACCGTGACATAAAGGGCGCAAATATTCTACTCGAAAACAACTTTGAAGCCAAGGTGGCAGATTTTGGATTGGCAAAGCTTACACAAGACAACAACACGCATGTTTCCACCCGTGTAATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCTTCAAGTGGCAAATTAACTGAGAAGTCCGATGTCTTCTCATTTGGTATTATGCTTCTGGAGCTCATAACAGGACGACCTCCCGTTGACACTACCGGAGAATATGAAGAGGACAGTTTAGTTGACTGGGCTAGACCTCTTTGCATAAAGGCGATGGAAGGTGGGAGCTTTGAAGGTCTGTCGGATCCACGACTAGGCAACAATTACGATATGCAGGAGATGGCCCGTATGGTGGCTTGTGCTGCTGCCAGCGTCAGGCACTCCGCTAGAAGGCGACCAAAAATGAGCCAAATAGTACGTGCTTTGGAGGGCGATGTGTCACTGGATGATCTGAGCGAAGGGGTGAAGCCAGGGCAAAGTTCAATATTCACAAGCAACAGTATGGAGTATGATGCTAGCACTTACAGTGCAGATATGAAGAAGTTCAGGAAGCTAGCATTGGATAGCGGCTACGCAAGCAGTGAGTTTGGCCAAACAAGTGAGTATGGCCTCAACCCTTCCTCCTCAAGCAGTGAGGAGCACTCTTCTGAGTACACCAAGACCACCAAGTAA 2049 0.4978 MASSSDSAPSPDSSSSDSPPSPPPPDSSSSDDSSSSPPPQPPPPPSDDQSPPPPPDQDNGGDSNNSSPPPPPPSNGNDNSDGNNSKTGSPPPPPPPANAKGGEFSPPPPVHRLSPPEKSSHGSSDNPSPSSGSNSDGSQLSVPAIIGLAAGAGLLLLVFILIFIACNRRKKRRSEGPIIYYANKKFEKNHMDVLRVINNGHVFERDFNEGKIYGDQCMNKFGETHADDDYYKQANKGNNWNNTGYNTGDQHVMNMPTPPGAMGGGVNKSPWGAPPAPFSGNMNSGEMSSASYSGPVGPPQPPPHPSVALGFNKSTFTYEELAAATSGFAQANLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDKEFQAEVDVISRVHHRHLVSLVGYCIQEGRSLLVYEFVPNKTMEYHLHGKDRPVMDWPTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKLTQDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLELITGRPPVDTTGEYEEDSLVDWARPLCIKAMEGGSFEGLSDPRLGNNYDMQEMARMVACAAASVRHSARRRPKMSQIVRALEGDVSLDDLSEGVKPGQSSIFTSNSMEYDASTYSADMKKFRKLALDSGYASSEFGQTSEYGLNPSSSSSEEHSSEYTKTTK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4806g00006 682 Pfam Protein tyrosine and serine/threonine kinase 332 531 IPR001245 GO:0004672|GO:0006468
Pral4806g00006 682 ProSiteProfiles Protein kinase domain profile. 328 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4806g00006 682 FunFam proline-rich receptor-like protein kinase PERK1 306 403 - -
Pral4806g00006 682 MobiDBLite consensus disorder prediction 87 114 - -
Pral4806g00006 682 MobiDBLite consensus disorder prediction 35 58 - -
Pral4806g00006 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Pral4806g00006 682 MobiDBLite consensus disorder prediction 654 674 - -
Pral4806g00006 682 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Pral4806g00006 682 Gene3D Phosphorylase Kinase; domain 1 305 403 - -
Pral4806g00006 682 MobiDBLite consensus disorder prediction 263 301 - -
Pral4806g00006 682 Gene3D Transferase(Phosphotransferase) domain 1 404 612 - -
Pral4806g00006 682 MobiDBLite consensus disorder prediction 1 137 - -
Pral4806g00006 682 MobiDBLite consensus disorder prediction 654 682 - -
Pral4806g00006 682 MobiDBLite consensus disorder prediction 117 137 - -
Pral4806g00006 682 SUPERFAMILY Protein kinase-like (PK-like) 303 601 IPR011009 -
Pral4806g00006 682 FunFam Proline-rich receptor-like protein kinase PERK1 404 612 - -
Pral4806g00006 682 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 152 653 IPR047117 -
Pral4806g00006 682 SMART serkin_6 328 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4806g00006 Pral-Chr4806 48956 51917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4806g00006 306 679 Trihelix Transcription Factor Family AT1G70460 58.824 4.31e-151 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pral4806g00006 PK_Tyr_Ser-Thr 6.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4806g00006 - - gmx:100806299 687.567