Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00108 ATGGAGTCACCCGCAGTTGGTGTGCTGCCGGCTAAACGCCCTGCAAATGGATTTAATTTAGAGAAACACAAAAGATTAAAAGTTGTAGACTATAGCAATCCATATGCAATTGCCGACTTGCTTGATGGCCTGAACCACGGAAAATTTGGAAGTGTCACAAAGGATATAGAGTCCCTTATAGCTCAAAAGATGCAGACATTGAGCCCTATATTTGCAAAAGATCCTGCGCTTCTACAGTTTGTGAAAGTGGGAATGAATCACAATGAAGACACTGCAAAGAAAATCATAGATTTGGAGGATAATCTCAAGACAAAGACTGCTCCAAAAGCATCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAAGAAACCTTTTCTGCCATTTCAAGAAGTTGTACTGCCAAAACCTGTTGTCCCACCGACTACAAAGGACATGGTGTACCATGGTCCCAATGCACATCCTTCTATTGGGTGTCATGCTGGAATTCTAGGTGTAAAACCTGAACTTTCTCTTGTTGGTGAAGACAACATTGAAAAAGATAAAGGTGCTTTTATTGGTGTTCAAGGGGAAGACAATCCACAGGCTGATACAAAGGGCGATGAGCTAGATGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGATGCTATGGATTCTCCACATGATGAAGCTGAAAAGGGTGGGGGTGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTCTGTGGAGTTATCGACAGAGGAATTGAAACCATATTTGAATTCCAGTACAAGGTCAAAAAAAGTACAAGAACTTACGCGGCTGATTCATGGAATGCCAAAGAGAGAACAGCGCCTGAGGTATCAGGACTTAAATTTGGTGAAGATGGTCTTGTGATAACTGAAATATCTGCTCACCCTAGGCATATGAAGCAAATGAAACCTCATCAAATTGAAGGATTTAATTTTCTTGTCCGTAACCTTGCGGGTGACAATCCTGGTGGTTGCATCTTGGCCCATGCTCCTGGTTCTGGGAAGACATTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGCAAGTATCCTCAGGCTCATCCCCTTGTGGTTCTTCCTAAGGGAATATTGGCTACTTGGAAAAAGGAGTTCCAAACATGGCAAGTGGAGGACATTCCACTCTATGATTTTTACTCTGCTAAGGCAGACAGTCGGTCTCAGCAACTGGAAGTTTTAAAACAGTGGGTGGAGCAGAAGAGTATTCTTTTCCTAGGATACAAACAATTCTCTTCAATTGTCTGTGATACTGGAACTAGCCCCGTATCAGTAACTTGCCAAAAGATATTGCTTGAGGCTCCTTCTATTCTAATTTTAGATGAGGGACACACACCAAGGAATGACAACACTGACATAGTTCAATCCCTTACGAAAGTGCAAACTCCTCGAAAAGTTGTGCTGTCAGGAACCCTATATCAAAATCATGTCAAGGAGGTGTTTAACATTTTAAACATTGTGCGTCCACCAAATTTTCTACGTTCACAGACATCTCGACCTATTGTCAGGCGCATTAAGAGTAGAGTGCATGTACCAGGCGTGAAAGATTTCTGTGACTTGGTGGAGAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAAGCCAGGTACTTCATTACTACAAGGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTTGCTGTTGTGCTCAATCTTACTCCCCGACAGAAGCATGAAGTCCATAAACTAAAGCACTTATCCAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTCCACGCTAAATTAAAGCCTATGGCGGAAAATTGCGCTGAGAATTCTGCTGTATCTGATCAGATGATGGATGAGAAAATAGAGAGTATAGATGTGGAAGATGGAGTAAAGTCAAAATTCTTTCTTAAAATGCTGAACCTTTGTGAATCAAGTGGGGAGAAGCTTCTAGTTTTCAGCCAATATCTCTTGCCTTTGAAATATTTAGAAAGGTTAACTGTGAAAAGGAAGGGATGGAGTCCAGGAAAAGAAATATTTGTTATATCAGGTGAATCAAGCTCTGAACAAAGAGAATGGTCCATGGAGCGGTTTAACAATTCACCAGATGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTCTGGTTGGGGCATCGCGCATAATTATTTTAGATGTTCATCTAAATCCATCAGTGACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGATAGCTGCCGATTCTCCTGAACAAGAAGACCATGATACTTGTTTCAAGAAGGAATTAATATCAAAAATGTGGTTTGAATGGAATGAATACTGCGGCTTTCGTGATTTTGAAGTTGAGACTGTTAATGTGGAACAATGTGATGATTTCTTTCTGCAAAGTCCGTTGCTAAGGGATGATATTAAAATTCTGCATAGAAGGCCTTGA 2568 0.4077 MESPAVGVLPAKRPANGFNLEKHKRLKVVDYSNPYAIADLLDGLNHGKFGSVTKDIESLIAQKMQTLSPIFAKDPALLQFVKVGMNHNEDTAKKIIDLEDNLKTKTAPKASSTVVIIDSDEEDDRDKKPFLPFQEVVLPKPVVPPTTKDMVYHGPNAHPSIGCHAGILGVKPELSLVGEDNIEKDKGAFIGVQGEDNPQADTKGDELDDIWREMSMAIECSKDDAMDSPHDEAEKGGGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYAADSWNAKERTAPEVSGLKFGEDGLVITEISAHPRHMKQMKPHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPQAHPLVVLPKGILATWKKEFQTWQVEDIPLYDFYSAKADSRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDTGTSPVSVTCQKILLEAPSILILDEGHTPRNDNTDIVQSLTKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLTPRQKHEVHKLKHLSRKFKISSVGSAVYLHAKLKPMAENCAENSAVSDQMMDEKIESIDVEDGVKSKFFLKMLNLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSPGKEIFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFRDFEVETVNVEQCDDFFLQSPLLRDDIKILHRRP 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00108 855 SMART ultradead3 317 521 IPR014001 -
Pral4803g00108 855 SMART helicmild6 690 778 IPR001650 -
Pral4803g00108 855 Pfam Helicase conserved C-terminal domain 668 777 IPR001650 -
Pral4803g00108 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 816 IPR027417 -
Pral4803g00108 855 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 664 832 IPR001650 -
Pral4803g00108 855 Pfam SNF2-related domain 341 606 IPR000330 GO:0005524|GO:0140658
Pral4803g00108 855 Gene3D - 294 535 IPR038718 -
Pral4803g00108 855 CDD SF2_C_SNF 649 789 - -
Pral4803g00108 855 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 335 514 IPR014001 -
Pral4803g00108 855 Gene3D - 585 838 IPR027417 -
Pral4803g00108 855 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 197 852 IPR044567 GO:0080188
Pral4803g00108 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 516 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00108 Pral-Chr4803 565366 570895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00108 675 796 RAD5 or RAD16-like Gene Family AT5G43530 36.066 1.92e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4803g00108 SNF2_N 3.8e-21 CL0023