Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00107 AATGATGGGAGACTAGAAAATGAAAGGGCCCCTGCTAATAGAGAGCCTAACCCTCAAGATTTAGCCGGCAACACCTCTTGTGAGCTTTTACATGCTGAAAAACAAGATCTGCAGAACAAGTTAACAAAGCTACTGTCAATGCTGGATGAGGTTCACAGCAGGTACAAACAATATTATCATCAGATGCAGATTGTGGTATCGTCATTTGATGTGATAGCAGGACGTGGGGCAGCTAAACCATACACGGCACTGGCTCTCCAAACCATTTCGCGTCATTTCCGGTGCTTGCATGATGCAATCACTGGCCAGATCAGTGCGACACAGAAGAGCCTTGGAGAGCAAGATTCTGCAGGAAATAATGAAGGAGTTGGAATATCAAGACTCCGGTATGTTGACCAACAAATCCGGCAACAGAGGGCTCTCCAGCAGCTTGGAGTGATGCATCATGCGTGGAGGCCACAAAGGGGACTACCAGAAGGCTCTGTTTCAATTCTTCGCGCCTGGCTTTTTGAACATTTCCTTCATCCCTATCCCAAAGATTCTGAAAAGGCAATGCTAGCAAGGCAGACAGGTTTGACTAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGAGTTCGTCTCTGGAAACCTATGATTGAGGAGATGTACAAGGAAGAAATTGGAGATGCCGACTTGAACTCCAGTTCTTCAACTGAAGAGGCATCCAAGGTAGGCAAAAGCGATGTCAAGATCTCCGAAGATGGGTGCGATGATTTACAACAGAGCCAGCGTTCAATAGCCGACAAGAACAGCAATGTTGGACTTGGACAAACAAAAGACTTGGGATCTGACAAGCAGACCGAGGAGCATCAAAGGCTCAGCTTCGATGACTGTAGTGTCTTCCAAGATAACACAGATGTTCAGACTAATGAAGGCAATGCAGGGTTTGTGGCGGTTGCTCCGGCGTGCCAAATGTCCGAGTTGGGAAGGTTTCAGTCTGGGAACGGCGTGTCCCTGACATTAGGCTTGCAGCACTGTGAAGTTGGTGACTTTATGTCTGGTGAGAGTCGTCATAGCTTCGTTGTCATGAGGGAGGATGGTACCATTGGAGCTCAGACATCAGAACTTGATTACGTAGCTGCTGGAAACCAGCACCGAAGGTTCACTGCGTCCCGTTAA 1161 0.4737 NDGRLENERAPANREPNPQDLAGNTSCELLHAEKQDLQNKLTKLLSMLDEVHSRYKQYYHQMQIVVSSFDVIAGRGAAKPYTALALQTISRHFRCLHDAITGQISATQKSLGEQDSAGNNEGVGISRLRYVDQQIRQQRALQQLGVMHHAWRPQRGLPEGSVSILRAWLFEHFLHPYPKDSEKAMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKEEIGDADLNSSSSTEEASKVGKSDVKISEDGCDDLQQSQRSIADKNSNVGLGQTKDLGSDKQTEEHQRLSFDDCSVFQDNTDVQTNEGNAGFVAVAPACQMSELGRFQSGNGVSLTLGLQHCEVGDFMSGESRHSFVVMREDGTIGAQTSELDYVAAGNQHRRFTASR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00107 386 MobiDBLite consensus disorder prediction 259 283 - -
Pral4803g00107 386 Pfam Homeobox KN domain 168 207 IPR008422 GO:0003677|GO:0006355
Pral4803g00107 386 MobiDBLite consensus disorder prediction 224 247 - -
Pral4803g00107 386 Coils Coil 27 54 - -
Pral4803g00107 386 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 231 - -
Pral4803g00107 386 Gene3D - 147 225 - -
Pral4803g00107 386 FunFam BEL1-like homeodomain protein 9 154 216 - -
Pral4803g00107 386 CDD homeodomain 151 212 IPR001356 GO:0003677
Pral4803g00107 386 SUPERFAMILY Homeodomain-like 153 218 IPR009057 -
Pral4803g00107 386 SMART prehox3 1 102 IPR006563 -
Pral4803g00107 386 ProSiteProfiles 'Homeobox' domain profile. 148 211 IPR001356 GO:0003677
Pral4803g00107 386 MobiDBLite consensus disorder prediction 259 275 - -
Pral4803g00107 386 MobiDBLite consensus disorder prediction 1 23 - -
Pral4803g00107 386 Pfam Associated with HOX 22 101 IPR006563 -
Pral4803g00107 386 SMART HOX_1 151 215 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00107 Pral-Chr4803 560719 563791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00107 19 238 Homeobox Transcription Factor Family AT2G16400 72.124 6.86e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral4803g00107 POX 1.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4803g00107 - - vra:111240485 481.1