Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00106 ATGGGGAAGAAGAAAGTGAAGGAAAGTGGAGGGAAAGAGCACTGCCCCTCTACTGTTTTTGTCTCGAACTTGCCCTACTCATTCACCAATTCTCAGTTGGAGGAGACGTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGTGGTTTTGGTTATGTTCAATTCGCTGTCGAGGAAGATGCTAACCGTGCAATTGAGTCGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGCAGTAAAGCATGCCATGCCTCGTCCTCCCCGTGAAGCACGACAATCAAAGTCAAACCAAGCAGAGAATGCTGATGATATCCCAAAGTCAAAAAATGATGACAATGATGGTGGCTTTTCTGGAGTGAAGAAGCCTTCGTCAGTTACTAAGGAAAAAGTTGTAAATAATGAAAACCATTCAAGGAAGCATAGTGAAGTGAAAAAAGCAGTTCTTTGTAGGGATATAGCAGATGAGGGGGGCTGTTCTGAAAAGCAGAGGGTTGCTAGAACTGTCATATTTGGCGGTCTTATCAATTCGGATATGGCTGAAGTTGTTCACAGCCAAGTACGGGAGATTGGCAGTGTGTGTTCTATAAAGTACCCCCTTCCTAGGGAAGAATTTGAACAGCATGGTCTCTTGCAAGATGGATGTAAATTGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCGTTGCTGCATCAGAAAGAAATTGGAGGAGGAATTGTCTGGGCACGTCAATTGGGTGGAGAGGGTTCCAAGACACAGAAATGGAAGCTTATTGTTAGAAATCTTCCGTTCAAGGCCAAGGAAAATGAAGTAAAAGAAATGTTTTCATCTGCTGGGTTCGTGTGGGATGTATTTATTCCACGCAAGTCTGATACAGGACTGTCTAAGGGTTTTGCATTTGTGAAATTCACTTGCAAGCAACATGCAGAAAATGCTATTCAGAAGCTTAATGGATCAAAGCTTGGCAAGCGCCTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAATGATAAAAATGGTATGCTTGCTTTGGAAAATGGACAACATAAGGTGACAGAGGAAGATGGTAGTAGTTCTGAGGACAATTCAGAGGATGATGTTGAGGATACAGGCAAACAGGACCATCAAGGAGATGATACTGATCGAAATGACTGCAGCTCCTCCCAGGAAGAAGATGTGCCAGCTGAAGTTAACTTTGATAAGGAAGCAGAGATTGCCAAAAAGGTTCTTAAGAACCTAATGACATGCTCCACCAAAGGAACATCCGCAAATGATGATTCTATGTTTCCCAAGAAAAACAAGGAATCAAAATCCAATAAAAACATTAATGAGGCAGATAAAAAGTCATCCAAGGAGTTAGAAAAGGTTACAGATGTTTTTGAGCCTGAAATATTGGGCAAAAGCGAGATCTCTAATCCTAAGCAAACAGAAGAAGATTTGCAGAGAACAGTTTTCATAAGTAACCTTCCCTTTGACTGTGCTAATGAAGAAGTGAAACAACGATTCTCTGGATTTGGGGAAGTGGAAGACTTTAAAGCAGTCCTCCACCAGGTGACCAAACGGCCAAGAGGAACTGGTTTTCTCAAGTTTAAAACTGCAGATGCAGCTGATGCTGCAGTTTCAACTGCTAACGCTGCTTCTGGCTTGGGTATTCTTCTCAAAGGTAGGCCATTAAAAGTTTTTAGGGCTTTAGATAAGAAGTCGGCTCGTGATAAGGAACTAAAGAAGGCCCAAGATGACAATCATGACCACCGCAATCTCTACCTGGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAAAGAAAAAAGGCAACAAAGCTACAATCGCCAAATTTCCATGTTTCAAGGACTAGACTTGTTATTTACAACTTACCAAAGTCGATGACTGAAAAAGAGCTCAAGAAGCGTTGCGTTGATGCAGTTACCTCTAGAGCCACCAAGCAAAAGCCTCAAATTCGGCAGATAAAGTTCTTGAAGGATGTGAAGAAAGGAAAGGTTGTTACAAAACATCATTCACGTGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAACATGCCCTTGTGGCTTTACGAGTTCTGAATAATAATCCAGAAACTTTTGGTCCTGAACATCGGCCAATTGTGGAGTTTGCTGTTGATAATGTTCAAACAATTAAACTTCGGAAAGCAAAGCTACAGTTTCAGCAGCAGGCTGCTGCTCACGGTGACAGCAACGTTGAGGAAAATGAGGAACCCGACGTTTCAGGTTTCCATACCAATCGAAAGGATAGAAAACGAAAATCACAGGATCATGACAAACCGGTGAAGGATTCAGTGCTCGATAAAGAAGGTGAACCAGCAAGTATATTGCCAAATCAAAGTGCCACGGGTGCACGCAATGCCAAAAGACAGAAAGGCAACCGTAAAAGTAAAAAGGCAGAAGGGTCATCGTCACATAAAGAAAATTCAGAAACCTTGTCCAAGAAGCCAAATGTTTACCAAGATGACCAGAATCATGGTGGCAGGACGTCAAACACTGTTACTGCCTCCTCCAAAACAATCAACGGTAAAAAGGAAGGTCATGGATTGAAGAAGAGGAGGACTCAGAATCAAGCAGAAGCTGGGGAAAATGTACCAAGAAAACGATCAAAAAAGAATAAAGAGCCTGTAGGGAAAGACGTGGTGGATAAGCTTGACATGCTTATACAGCAATACAGATCGAAGTTCTCACAGCAGGGTTCACAAGGGAATGATGGGGAGAGAAAACCTTCCAAACAGCTAAGAAAATGGTTTGAACCATAA 2892 0.426 MGKKKVKESGGKEHCPSTVFVSNLPYSFTNSQLEETFSEVGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIESKNGSSVGGRKIAVKHAMPRPPREARQSKSNQAENADDIPKSKNDDNDGGFSGVKKPSSVTKEKVVNNENHSRKHSEVKKAVLCRDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSQVREIGSVCSIKYPLPREEFEQHGLLQDGCKLDASAVLYTSVKSARASVALLHQKEIGGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFSSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQHAENAIQKLNGSKLGKRLIAVDWAVPKKIYSNDKNGMLALENGQHKVTEEDGSSSEDNSEDDVEDTGKQDHQGDDTDRNDCSSSQEEDVPAEVNFDKEAEIAKKVLKNLMTCSTKGTSANDDSMFPKKNKESKSNKNINEADKKSSKELEKVTDVFEPEILGKSEISNPKQTEEDLQRTVFISNLPFDCANEEVKQRFSGFGEVEDFKAVLHQVTKRPRGTGFLKFKTADAADAAVSTANAASGLGILLKGRPLKVFRALDKKSARDKELKKAQDDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKATKLQSPNFHVSRTRLVIYNLPKSMTEKELKKRCVDAVTSRATKQKPQIRQIKFLKDVKKGKVVTKHHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTIKLRKAKLQFQQQAAAHGDSNVEENEEPDVSGFHTNRKDRKRKSQDHDKPVKDSVLDKEGEPASILPNQSATGARNAKRQKGNRKSKKAEGSSSHKENSETLSKKPNVYQDDQNHGGRTSNTVTASSKTINGKKEGHGLKKRRTQNQAEAGENVPRKRSKKNKEPVGKDVVDKLDMLIQQYRSKFSQQGSQGNDGERKPSKQLRKWFEP 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00106 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Pral4803g00106 963 MobiDBLite consensus disorder prediction 934 950 - -
Pral4803g00106 963 Gene3D - 259 403 IPR012677 -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 370 420 - -
Pral4803g00106 963 CDD RRM1_RBM28_like 18 96 - -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 895 925 - -
Pral4803g00106 963 FunFam RNA-binding motif protein 28 653 748 - -
Pral4803g00106 963 CDD RRM4_RBM28_like 654 751 - -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 768 963 - -
Pral4803g00106 963 CDD RRM3_RBM28_like 502 583 - -
Pral4803g00106 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Pral4803g00106 963 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 962 - -
Pral4803g00106 963 CDD RRM2_RBM28_like 273 349 - -
Pral4803g00106 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 585 IPR000504 GO:0003723
Pral4803g00106 963 MobiDBLite consensus disorder prediction 840 856 - -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 388 420 - -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 112 126 - -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 774 813 - -
Pral4803g00106 963 Gene3D - 653 748 IPR012677 -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 857 885 - -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 448 470 - -
Pral4803g00106 963 SUPERFAMILY RNA-binding domain, RBD 502 732 IPR035979 GO:0003676
Pral4803g00106 963 FunFam - 2 128 - -
Pral4803g00106 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 654 762 IPR000504 GO:0003723
Pral4803g00106 963 SMART rrm1_1 273 346 IPR000504 GO:0003723
Pral4803g00106 963 SMART rrm1_1 503 581 IPR000504 GO:0003723
Pral4803g00106 963 SMART rrm1_1 655 746 IPR000504 GO:0003723
Pral4803g00106 963 SMART rrm1_1 18 91 IPR000504 GO:0003723
Pral4803g00106 963 SUPERFAMILY RNA-binding domain, RBD 17 258 IPR035979 GO:0003676
Pral4803g00106 963 SUPERFAMILY RNA-binding domain, RBD 268 355 IPR035979 GO:0003676
Pral4803g00106 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Pral4803g00106 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 564 IPR000504 GO:0003723
Pral4803g00106 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Pral4803g00106 963 MobiDBLite consensus disorder prediction 437 470 - -
Pral4803g00106 963 Gene3D - 434 599 IPR012677 -
Pral4803g00106 963 Gene3D - 2 109 IPR012677 -
Pral4803g00106 963 MobiDBLite consensus disorder prediction 76 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00106 Pral-Chr4803 546831 554542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00106 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 4.52e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4803g00106 K14573 - gmx:100794821 1283.86