Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00105 ATGGGGAAGAAGAAAGTGAAGGAAAGTGGAGGGAAAGAGCACTGCCCCTCTACTGTTTTTGTCTCGAACTTGCCCTACTCATTCACCAATTCTCAGTTGGAGGAGACGTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGTGGTTTTGGTTATGTTCAATTCGCTGTCGAGGAAGATGCTAACCGTGCAATTGAGTCGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGCAGTAAAGCATGCCATGCCTCGTCCTCCCCGTGAAGCACGACAATCAAAGTCAAACCAAGCAGAGAATGCTGATGATATCCCAAAGTCAAAAAATGATGACAATGATGGTGGCTTTTCTGGAGTGAAGAAGCCTTCGTCAGTTACTAAGGAAAAAGTTGTAAATAATGAAAACCATTCAAGGAAGCATAGTGAAGTGAAAAAAGCAGTTCTTTGTAGGGATATAGCAGATGAGGGGGGCTGTTCTGAAAAGCAGAGGGTTGCTAGAACTGTCATATTTGGCGGTCTTATCAATTCGGATATGGCTGAAGTTGTTCACAGCCAAGTACGGGAGATTGGCAGTGTGTGTTCTATAAAGTACCCCCTTCCTAGGGAAGAATTTGAACAGCATGGTCTCTTGCAAGATGGATGTAAATTGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCGTTGCTGCATCAGAAAGAAATTGGAGGAGGAATTGTCTGGGCACGTCAATTGGGTGGAGAGGGTTCCAAGACACAGAAATGGAAGCTTATTGTTAGAAATCTTCCGTTCAAGGCCAAGGAAAATGAAGTAAAAGAAATGTTTTCATCTGCTGGGTTCGTGTGGGATGTATTTATTCCACGCAAGTCTGATACAGGACTGTCTAAGGGTTTTGCATTTGTGAAATTCACTTGCAAGCAACATGCAGAAAATGCTATTCAGAAGCTTAATGGATCAAAGCTTGGCAAGCGCCTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAATGATAAAAATGGACAACATAAGGTGACAGAGGAAGATGGTAGTAGTTCTGAGGACAATTCAGAGGATGATGTTGAGGATACAGGCAAACAGGACCATCAAGGAGATGATACTGATCGAAATGACTGCAGCTCCTCCCAGGAAGAAGATGTGCCAGCTGAAGTTAACTTTGATAAGGAAGCAGAGATTGCCAAAAAGGTTCTTAAGAACCTAATGACATGCTCCACCAAAGGAACATCCGCAAATGATGATTCTATGTTTCCCAAGAAAAACAAGGAATCAAAATCCAATAAAAACATTAATGAGGCAGATAAAAAGTCATCCAAGGAGTTAGAAAAGGTTACAGATGTTTTTGAGCCTGAAATATTGGGCAAAAGCGAGATCTCTAATCCTAAGCAAACAGAAGAAGATTTGCAGAGAACAGTTTTCATAAGTAACCTTCCCTTTGACTGTGCTAATGAAGAAGTGAAACAACGATTCTCTGGATTTGGGGAAGTGGAAGACTTTAAAGCAGTCCTCCACCAGGTGACCAAACGGCCAAGAGGAACTGGTTTTCTCAAGTTTAAAACTGCAGATGCAGCTGATGCTGCAGTTTCAACTGCTAACGCTGCTTCTGGCTTGGGTATTCTTCTCAAAGGTAGGCCATTAAAAGTTTTTAGGGCTTTAGATAAGAAGTCGGCTCGTGATAAGGAACTAAAGAAGGCCCAAGATGACAATCATGACCACCGCAATCTCTACCTGGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAAAGAAAAAAGGCAACAAAGCTACAATCGCCAAATTTCCATGTTTCAAGGACTAGACTTGTTATTTACAACTTACCAAAGTCGATGACTGAAAAAGAGCTCAAGAAGCGTTGCGTTGATGCAGTTACCTCTAGAGCCACCAAGCAAAAGCCTCAAATTCGGCAGATAAAGTTCTTGAAGGATGTGAAGAAAGGAAAGGTTGTTACAAAACATCATTCACGTGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAACATGCCCTTGTGGCTTTACGAGTTCTGAATAATAATCCAGAAACTTTTGGTCCTGAACATCGGCCAATTGTGGAGTTTGCTGTTGATAATGTTCAAACAATTAAACTTCGGAAAGCAAAGCTACAGTTTCAGCAGCAGGCTGCTGCTCACGGTGACAGCAACGTTGAGGAAAATGAGGAACCCGACGTTTCAGGTTTCCATACCAATCGAAAGGATAGAAAACGAAAATCACAGGATCATGACAAACCGGTGAAGGATTCAGTGCTCGATAAAGAAGGTGAACCAGCAAGTATATTGCCAAATCAAAGTGCCACGGGTGCACGCAATGCCAAAAGACAGAAAGGCAACCGTAAAAGTAAAAAGGCAGAAGGGTCATCGTCACATAAAGAAAATTCAGAAACCTTGTCCAAGAAGCCAAATGTTTACCAAGATGACCAGAATCATGGTGGCAGGACGTCAAACACTGTTACTGCCTCCTCCAAAACAATCAACGGTAAAAAGGAAGGTCATGGATTGAAGAAGAGGAGGACTCAGAATCAAGCAGAAGCTGGGGAAAATGTACCAAGAAAACGATCAAAAAAGAATAAAGAGCCTGTAGGGAAAGACGTGGTGGATAAGCTTGACATGCTTATACAGCAATACAGATCGAAGTTCTCACAGCAGGGTTCACAAGGGAATGATGGGGAGAGAAAACCTTCCAAACAGCTAAGAAAATGGTTTGAACCATAA 2871 0.4263 MGKKKVKESGGKEHCPSTVFVSNLPYSFTNSQLEETFSEVGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIESKNGSSVGGRKIAVKHAMPRPPREARQSKSNQAENADDIPKSKNDDNDGGFSGVKKPSSVTKEKVVNNENHSRKHSEVKKAVLCRDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSQVREIGSVCSIKYPLPREEFEQHGLLQDGCKLDASAVLYTSVKSARASVALLHQKEIGGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFSSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQHAENAIQKLNGSKLGKRLIAVDWAVPKKIYSNDKNGQHKVTEEDGSSSEDNSEDDVEDTGKQDHQGDDTDRNDCSSSQEEDVPAEVNFDKEAEIAKKVLKNLMTCSTKGTSANDDSMFPKKNKESKSNKNINEADKKSSKELEKVTDVFEPEILGKSEISNPKQTEEDLQRTVFISNLPFDCANEEVKQRFSGFGEVEDFKAVLHQVTKRPRGTGFLKFKTADAADAAVSTANAASGLGILLKGRPLKVFRALDKKSARDKELKKAQDDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKATKLQSPNFHVSRTRLVIYNLPKSMTEKELKKRCVDAVTSRATKQKPQIRQIKFLKDVKKGKVVTKHHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTIKLRKAKLQFQQQAAAHGDSNVEENEEPDVSGFHTNRKDRKRKSQDHDKPVKDSVLDKEGEPASILPNQSATGARNAKRQKGNRKSKKAEGSSSHKENSETLSKKPNVYQDDQNHGGRTSNTVTASSKTINGKKEGHGLKKRRTQNQAEAGENVPRKRSKKNKEPVGKDVVDKLDMLIQQYRSKFSQQGSQGNDGERKPSKQLRKWFEP 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00105 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Pral4803g00105 956 MobiDBLite consensus disorder prediction 76 153 - -
Pral4803g00105 956 MobiDBLite consensus disorder prediction 833 849 - -
Pral4803g00105 956 MobiDBLite consensus disorder prediction 430 463 - -
Pral4803g00105 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 495 578 IPR000504 GO:0003723
Pral4803g00105 956 MobiDBLite consensus disorder prediction 767 806 - -
Pral4803g00105 956 CDD RRM1_RBM28_like 18 96 - -
Pral4803g00105 956 MobiDBLite consensus disorder prediction 441 463 - -
Pral4803g00105 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Pral4803g00105 956 CDD RRM2_RBM28_like 273 349 - -
Pral4803g00105 956 SUPERFAMILY RNA-binding domain, RBD 495 725 IPR035979 GO:0003676
Pral4803g00105 956 MobiDBLite consensus disorder prediction 850 878 - -
Pral4803g00105 956 Gene3D - 2 109 IPR012677 -
Pral4803g00105 956 Gene3D - 430 592 IPR012677 -
Pral4803g00105 956 MobiDBLite consensus disorder prediction 112 126 - -
Pral4803g00105 956 MobiDBLite consensus disorder prediction 888 918 - -
Pral4803g00105 956 SUPERFAMILY RNA-binding domain, RBD 268 360 IPR035979 GO:0003676
Pral4803g00105 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 647 755 IPR000504 GO:0003723
Pral4803g00105 956 Gene3D - 646 741 IPR012677 -
Pral4803g00105 956 CDD RRM4_RBM28_like 647 744 - -
Pral4803g00105 956 MobiDBLite consensus disorder prediction 381 413 - -
Pral4803g00105 956 Gene3D - 260 395 IPR012677 -
Pral4803g00105 956 MobiDBLite consensus disorder prediction 358 413 - -
Pral4803g00105 956 CDD RRM3_RBM28_like 495 576 - -
Pral4803g00105 956 FunFam - 2 128 - -
Pral4803g00105 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 497 557 IPR000504 GO:0003723
Pral4803g00105 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Pral4803g00105 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Pral4803g00105 956 FunFam RNA-binding motif protein 28 646 741 - -
Pral4803g00105 956 MobiDBLite consensus disorder prediction 761 956 - -
Pral4803g00105 956 SUPERFAMILY RNA-binding domain, RBD 17 258 IPR035979 GO:0003676
Pral4803g00105 956 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 955 - -
Pral4803g00105 956 SMART rrm1_1 273 346 IPR000504 GO:0003723
Pral4803g00105 956 SMART rrm1_1 648 739 IPR000504 GO:0003723
Pral4803g00105 956 SMART rrm1_1 496 574 IPR000504 GO:0003723
Pral4803g00105 956 SMART rrm1_1 18 91 IPR000504 GO:0003723
Pral4803g00105 956 MobiDBLite consensus disorder prediction 927 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00105 Pral-Chr4803 546831 554542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00105 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 4.81e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4803g00105 K14573 - gmx:100794821 1274.23