Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00104 ATGGGGAAGAAGAAAGTGAAGGAAAGTGGAGGGAAAGAGCACTGCCCCTCTACTGTTTTTGTCTCGAACTTGCCCTACTCATTCACCAATTCTCAGTTGGAGGAGACGTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGTGGTTTTGGTTATGTTCAATTCGCTGTCGAGGAAGATGCTAACCGTGCAATTGAGTCGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGCAGTAAAGCATGCCATGCCTCGTCCTCCCCGTGAAGCACGACAATCAAAGTCAAACCAAGAGAATGCTGATGATATCCCAAAGTCAAAAAATGATGACAATGATGGTGGCTTTTCTGGAGTGAAGAAGCCTTCGTCAGTTACTAAGGAAAAAGTTGTAAATAATGAAAACCATTCAAGGAAGCATAGTGAAGTGAAAAAAGCAGTTCTTTGTAGGGATATAGCAGATGAGGGGGGCTGTTCTGAAAAGCAGAGGGTTGCTAGAACTGTCATATTTGGCGGTCTTATCAATTCGGATATGGCTGAAGTTGTTCACAGCCAAGTACGGGAGATTGGCAGTGTGTGTTCTATAAAGTACCCCCTTCCTAGGGAAGAATTTGAACAGCATGGTCTCTTGCAAGATGGATGTAAATTGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCGTTGCTGCATCAGAAAGAAATTGGAGGAGGAATTGTCTGGGCACGTCAATTGGGTGGAGAGGGTTCCAAGACACAGAAATGGAAGCTTATTGTTAGAAATCTTCCGTTCAAGGCCAAGGAAAATGAAGTAAAAGAAATGTTTTCATCTGCTGGGTTCGTGTGGGATGTATTTATTCCACGCAAGTCTGATACAGGACTGTCTAAGGGTTTTGCATTTGTGAAATTCACTTGCAAGCAACATGCAGAAAATGCTATTCAGAAGCTTAATGGATCAAAGCTTGGCAAGCGCCTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAATGATAAAAATGGTATGCTTGCTTTGGAAAATGGACAACATAAGGTGACAGAGGAAGATGGTAGTAGTTCTGAGGACAATTCAGAGGATGATGTTGAGGATACAGGCAAACAGGACCATCAAGGAGATGATACTGATCGAAATGACTGCAGCTCCTCCCAGGAAGAAGATGTGCCAGCTGAAGTTAACTTTGATAAGGAAGCAGAGATTGCCAAAAAGGTTCTTAAGAACCTAATGACATGCTCCACCAAAGGAACATCCGCAAATGATGATTCTATGTTTCCCAAGAAAAACAAGGAATCAAAATCCAATAAAAACATTAATGAGGCAGATAAAAAGTCATCCAAGGAGTTAGAAAAGGTTACAGATGTTTTTGAGCCTGAAATATTGGGCAAAAGCGAGATCTCTAATCCTAAGCAAACAGAAGAAGATTTGCAGAGAACAGTTTTCATAAGTAACCTTCCCTTTGACTGTGCTAATGAAGAAGTGAAACAACGATTCTCTGGATTTGGGGAAGTGGAAGACTTTAAAGCAGTCCTCCACCAGGTGACCAAACGGCCAAGAGGAACTGGTTTTCTCAAGTTTAAAACTGCAGATGCAGCTGATGCTGCAGTTTCAACTGCTAACGCTGCTTCTGGCTTGGGTATTCTTCTCAAAGGTAGGCCATTAAAAGTTTTTAGGGCTTTAGATAAGAAGTCGGCTCGTGATAAGGAACTAAAGAAGGCCCAAGATGACAATCATGACCACCGCAATCTCTACCTGGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAAAGAAAAAAGGCAACAAAGCTACAATCGCCAAATTTCCATGTTTCAAGGACTAGACTTGTTATTTACAACTTACCAAAGTCGATGACTGAAAAAGAGCTCAAGAAGCGTTGCGTTGATGCAGTTACCTCTAGAGCCACCAAGCAAAAGCCTCAAATTCGGCAGATAAAGTTCTTGAAGGATGTGAAGAAAGGAAAGGTTGTTACAAAACATCATTCACGTGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAACATGCCCTTGTGGCTTTACGAGTTCTGAATAATAATCCAGAAACTTTTGGTCCTGAACATCGGCCAATTGTGGAGTTTGCTGTTGATAATGTTCAAACAATTAAACTTCGGAAAGCAAAGCTACAGTTTCAGCAGCAGGCTGCTGCTCACGGTGACAGCAACGTTGAGGAAAATGAGGAACCCGACGTTTCAGGTTTCCATACCAATCGAAAGGATAGAAAACGAAAATCACAGGATCATGACAAACCGGTGAAGGATTCAGTGCTCGATAAAGAAGGTGAACCAGCAAGTATATTGCCAAATCAAAGTGCCACGGGTGCACGCAATGCCAAAAGACAGAAAGGCAACCGTAAAAGTAAAAAGGCAGAAGGGTCATCGTCACATAAAGAAAATTCAGAAACCTTGTCCAAGAAGCCAAATGTTTACCAAGATGACCAGAATCATGGTGGCAGGACGTCAAACACTGTTACTGCCTCCTCCAAAACAATCAACGGTAAAAAGGAAGGTCATGGATTGAAGAAGAGGAGGACTCAGAATCAAGCAGAAGCTGGGGAAAATGTACCAAGAAAACGATCAAAAAAGAATAAAGAGCCTGTAGGGAAAGACGTGGTGGATAAGCTTGACATGCTTATACAGCAATACAGATCGAAGTTCTCACAGCAGGGTTCACAAGGGAATGATGGGGAGAGAAAACCTTCCAAACAGCTAAGAAAATGGTTTGAACCATAA 2889 0.4258 MGKKKVKESGGKEHCPSTVFVSNLPYSFTNSQLEETFSEVGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIESKNGSSVGGRKIAVKHAMPRPPREARQSKSNQENADDIPKSKNDDNDGGFSGVKKPSSVTKEKVVNNENHSRKHSEVKKAVLCRDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSQVREIGSVCSIKYPLPREEFEQHGLLQDGCKLDASAVLYTSVKSARASVALLHQKEIGGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFSSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQHAENAIQKLNGSKLGKRLIAVDWAVPKKIYSNDKNGMLALENGQHKVTEEDGSSSEDNSEDDVEDTGKQDHQGDDTDRNDCSSSQEEDVPAEVNFDKEAEIAKKVLKNLMTCSTKGTSANDDSMFPKKNKESKSNKNINEADKKSSKELEKVTDVFEPEILGKSEISNPKQTEEDLQRTVFISNLPFDCANEEVKQRFSGFGEVEDFKAVLHQVTKRPRGTGFLKFKTADAADAAVSTANAASGLGILLKGRPLKVFRALDKKSARDKELKKAQDDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKATKLQSPNFHVSRTRLVIYNLPKSMTEKELKKRCVDAVTSRATKQKPQIRQIKFLKDVKKGKVVTKHHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTIKLRKAKLQFQQQAAAHGDSNVEENEEPDVSGFHTNRKDRKRKSQDHDKPVKDSVLDKEGEPASILPNQSATGARNAKRQKGNRKSKKAEGSSSHKENSETLSKKPNVYQDDQNHGGRTSNTVTASSKTINGKKEGHGLKKRRTQNQAEAGENVPRKRSKKNKEPVGKDVVDKLDMLIQQYRSKFSQQGSQGNDGERKPSKQLRKWFEP 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00104 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Pral4803g00104 962 MobiDBLite consensus disorder prediction 76 153 - -
Pral4803g00104 962 Gene3D - 433 598 IPR012677 -
Pral4803g00104 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 349 IPR000504 GO:0003723
Pral4803g00104 962 SMART rrm1_1 272 345 IPR000504 GO:0003723
Pral4803g00104 962 SMART rrm1_1 18 91 IPR000504 GO:0003723
Pral4803g00104 962 SMART rrm1_1 654 745 IPR000504 GO:0003723
Pral4803g00104 962 SMART rrm1_1 502 580 IPR000504 GO:0003723
Pral4803g00104 962 FunFam - 2 127 - -
Pral4803g00104 962 CDD RRM1_RBM28_like 18 96 - -
Pral4803g00104 962 MobiDBLite consensus disorder prediction 856 884 - -
Pral4803g00104 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 584 IPR000504 GO:0003723
Pral4803g00104 962 MobiDBLite consensus disorder prediction 894 924 - -
Pral4803g00104 962 MobiDBLite consensus disorder prediction 436 469 - -
Pral4803g00104 962 CDD RRM3_RBM28_like 501 582 - -
Pral4803g00104 962 FunFam RNA-binding motif protein 28 652 747 - -
Pral4803g00104 962 MobiDBLite consensus disorder prediction 447 469 - -
Pral4803g00104 962 MobiDBLite consensus disorder prediction 767 962 - -
Pral4803g00104 962 SUPERFAMILY RNA-binding domain, RBD 501 731 IPR035979 GO:0003676
Pral4803g00104 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 653 761 IPR000504 GO:0003723
Pral4803g00104 962 SUPERFAMILY RNA-binding domain, RBD 17 257 IPR035979 GO:0003676
Pral4803g00104 962 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 961 - -
Pral4803g00104 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 342 IPR000504 GO:0003723
Pral4803g00104 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 563 IPR000504 GO:0003723
Pral4803g00104 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Pral4803g00104 962 MobiDBLite consensus disorder prediction 933 949 - -
Pral4803g00104 962 CDD RRM2_RBM28_like 272 348 - -
Pral4803g00104 962 MobiDBLite consensus disorder prediction 839 855 - -
Pral4803g00104 962 MobiDBLite consensus disorder prediction 93 125 - -
Pral4803g00104 962 CDD RRM4_RBM28_like 653 750 - -
Pral4803g00104 962 MobiDBLite consensus disorder prediction 387 419 - -
Pral4803g00104 962 Gene3D - 2 131 IPR012677 -
Pral4803g00104 962 Gene3D - 258 402 IPR012677 -
Pral4803g00104 962 MobiDBLite consensus disorder prediction 773 812 - -
Pral4803g00104 962 SUPERFAMILY RNA-binding domain, RBD 267 354 IPR035979 GO:0003676
Pral4803g00104 962 MobiDBLite consensus disorder prediction 369 419 - -
Pral4803g00104 962 Gene3D - 652 747 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00104 Pral-Chr4803 546831 554542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00104 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 4.51e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4803g00104 K14573 - gmx:100794821 1278.08