Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00102 ATGGCTAAACCAAAGGCTCCCAGACGAACCCTAGAGTCATACACAGTCAAACACATAAGCAAAACCGTTAGAGCTGGCGACTGCGTTCTTATGCGGCCCTCCGAGCCGTCGAAACCGTCGTATGTGGCTAGGATCGAGCGGATCGAGGCCGACTCTCGAGGCGCCAACGTTAAGGTTCACGTCCGTTGGTATTATCGGCCGGAGGAGTCTATCGGTGGCCGTCGCCAGTTCCACGGTTCTAAAGAGGTTTTCCTCTCTGATCACTTTGATGTTCAGAGCGCCGACACGATCGAAGGCAAGTGCACGGTTCACAGTTTTAAGGGCTACACGAAGCTCGATGCTGTCGGAAATGACGATTTCTTCTGCCGTTTCGAATATAATTCCGCCACCGGAGCATTCAATCCAGATAGAGTCGCCGTGTATTGTAAATGTGAGATGCCTTACAATCCTGATGACCTAATGGTTCAATGTGAAGGCTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAACGACTTGACCACTTCTTCTGTGAAAGTTGTTCTGCGGAAGATCAAAATAAGTTGCCAAATCCTCATGCTGCGAGACACTCAGATACAAAGGTGGATACAAAACGCCGTCGACGGTGA 648 0.4969 MAKPKAPRRTLESYTVKHISKTVRAGDCVLMRPSEPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEDQNKLPNPHAARHSDTKVDTKRRRR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00102 215 MobiDBLite consensus disorder prediction 191 215 - -
Pral4803g00102 215 FunFam Chromatin remodeling protein EBS 1 133 - -
Pral4803g00102 215 SUPERFAMILY FYVE/PHD zinc finger 131 191 IPR011011 -
Pral4803g00102 215 Pfam PHD-finger 141 189 IPR019787 -
Pral4803g00102 215 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Pral4803g00102 215 PANTHER OS08G0421900 PROTEIN 5 204 - -
Pral4803g00102 215 SMART BAH_4 21 137 IPR001025 GO:0003682
Pral4803g00102 215 Gene3D - 2 133 IPR043151 -
Pral4803g00102 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 206 IPR013083 -
Pral4803g00102 215 SMART PHD_3 141 188 IPR001965 -
Pral4803g00102 215 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Pral4803g00102 215 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Pral4803g00102 215 Pfam BAH domain 22 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00102 Pral-Chr4803 542938 546353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00102 31 139 Core DNA Replication Machinery Family AT4G14700 29.358 6.06e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4803g00102 BAH 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4803g00102 K25868 - gmx:100787968 429.483