Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00089 ATGAAGATACTGTGCGATGTGTGTGACAGAGCGGAGGCCTCTGTCTTCTGTCCCTCCGACGAAGCTGCTCTCTGCTGCGCCTGTGATCGTACCATCCACCATGCCAACAAGCTCTCTCGCAAACATTCTCGCTTCTCTCTTCATCACCCTTCCTCTAATTCCTCTCCTCTCTGCGATATCTGTCAGGAGAGGAGAGCGTATCTGTTTTGCCAAGAGGACAGAGCGATACTGTGCAGAGAATGTGACGTTCCTCTTCACAGGGCCAGTGAGCATACTCGGAAACATAACAGGTTTCTTCTCACCGGTGTGAAGCTCTCTGCTTCTATCTCGAGCAGTGATTCTCAATCTAACATGAAGAGACACAGATCATCAGTTTCAAGTCAGAATGCCAGTTCTTCAATGGTGAATAGGTCTTTATTAGCCTCAGCGACTGGTTTTGGTAACGTTGAAGATCAGAGCATGATTAGTGATACCAGTTCAGTTTCAACAAGTAGCATTTCTGAATACTTGATCGAGAAGATACCTGGTTATTGCTTTGAAGATCTTCTTGACGCTTCTTCATTCCCTCCACTTAATGGTTTCTGCAAGAAGTATGGGAACCTGTCAGCATTTGAGGAGGAAGATATTAATGAAGCAAGTATGTATTTGTTTAGAAGCTCAAGATGA 666 0.4505 MKILCDVCDRAEASVFCPSDEAALCCACDRTIHHANKLSRKHSRFSLHHPSSNSSPLCDICQERRAYLFCQEDRAILCRECDVPLHRASEHTRKHNRFLLTGVKLSASISSSDSQSNMKRHRSSVSSQNASSSMVNRSLLASATGFGNVEDQSMISDTSSVSTSSISEYLIEKIPGYCFEDLLDASSFPPLNGFCKKYGNLSAFEEEDINEASMYLFRSSR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00089 221 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pral4803g00089 221 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 204 - -
Pral4803g00089 221 FunFam B-box zinc finger protein 21 1 98 - -
Pral4803g00089 221 MobiDBLite consensus disorder prediction 111 131 - -
Pral4803g00089 221 CDD Bbox1_BBX-like 57 100 - -
Pral4803g00089 221 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Pral4803g00089 221 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pral4803g00089 221 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pral4803g00089 221 Gene3D Classic Zinc Finger 1 100 - -
Pral4803g00089 221 CDD Bbox1_BBX-like 4 47 - -
Pral4803g00089 221 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00089 Pral-Chr4803 478649 481462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00089 1 210 C2C2-CO-like Transcription Factor Family AT1G75540 49.333 1.39e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pral4803g00089 zf-B_box 4.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4803g00089 - - tpra:123898275 239.195