Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00081 ATGACAAACCCTGCAGAGGATCCTCCCTCGCCCTCACGGTGCATCCCGCCGCTGCTCGAGCCTGCCACCGTCGAAGACATGCCACTCGCCCGGAGAGATGACGCTGATGGAGCGAAGACCCTCCTGCACTGTGACGAAGCGGAAGAGAAGCCATCCTCTCCTCCTATTCCACCTGCTCCCAGGGAAGTGTCAGAGGAAATCAGTGTAGCCGACATTGCCGTGGTGACCAAGAAGTTGGAGGAGGAGGCAGGCGAGGCTGTTGGGTCAAATGAAAATGAGGAAGCGGATAAAGTAGCTATAGGAATGGAGTCAAAAGACGCGTATGCAGCTTGCAGCTTAGGTGAGACAACTGAAACAGTGGAGGCATGGAAGGTTGAAGAGGAAACCGATGCAGCTGACATTGCTGAGGACATTAAGAAGGCAGAAGAGGAAGCCAATTTAGCTTACATTGAGGAGGACATGACAAGGGCAGAAGAGGAAGCCAATGTAGCTAACATTGACGAGGACATTACAAAAGTGGAAGAGGAAACTGATGTAGCTAACATTGCTGAGGATAATAAGAAGGTGGAAGAGAAAACTGATGTTGCTCACATTGCTGATGACAATACGAAGGTGGAAGAGGAAACTAATGTAGATAACATCGCTGAGGACATCACAAAGGTGAAAGAGGACGCAGATGTAGCTGACATTGTTGAAGTTGAGGAGGATGAGGCTGCCTCCTCATATGAGAAAGAGGAAGCAGGAAAAGTTGTAGCTAGGACGGAGCCAGCTGACACATTTGTTGCTTGTTCGCTAGGCGAGACAACTGAAATGGTAGAGATCAGGGAGGTGGACGAAGAGGCAGATGAAGATGGCATGCCAGATGAGAATGAGGAAGCTGAAAAAGTAGCAGTGGGGATGGAGATGGAAGATGGGTCTGTGGCTTCCACCCTTGGTGAGACAACTGAAGCAGACAAACTTGGCACGGAAGCTGAAGATAAGGAGGAGGCAGCAGAGGTGTTGAATGTGATGGGCACTATGGAAGGTACGACTGACACAGAAGAGGATGCAGATGGAGTTGGTGGAAGGGAGGAGGCCCTAGAGGCAGAAGAGATGGGGGTAGCCAATGAAGGAGATTTGATGGAAGAGGATGTAGATGCTGCTGAAGTAGCAGAATATGCTGGGGGTGCTGAGTTGACTGAGGAGATGGAGGTGGCTGAGGAGCAAGGTAGCAGCATCAGCAGTGCCAAGAGGAAGCGTGGGAAGAGCTCAAAGTCTGCAGTGAAAGTTCCAGTTAGAAAAAAGGTGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTGAGCTTGTGCTTTGTGATCGTAGGGGATGCCCAAAGGCTTACCATCCTACATGTGTTAATCGTGATGATGCATTCTTTCGAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAATTGTGGGAAGAGTTCTTACTACATGTGCTATACGTGTACATTCTCTTTGTGCAAGGGGTGCATCAAAGATGCTGTCATCTTTTGTGTTAGGGGTAAGAATGGCTTTTGTGAGACATGCATGAGGACTGTAATGCTGATTGAACAGAATGAGCTGGGCAACAAGGACATGGGGCAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTATACAGATCTTAAAGGGAAGCTATCTTTAACATATGATGAGCTTGCTCAAGCTAAAAACCCATGGAAGGGATCTGATGTCCTTCTTACCAAGCAGGAATCACCTGATGAGCTCTATGATGCTAATAATGATGAGGGATCACATTCAGATAACTCTTCTGAAAATTTAGAAAGCAGTAGTGTTAAAAGAAGAAAGGCCAATAAACGATTGAAGTCCCGTTCGAAGGAGGTGAATTCACATAGCACAATGGCATTGATTGATGACAAAGGGCCGTCTGCAGATGAGAGATCTGAGTGGGCATCAAAGGAACTTTTAGAGTTTGTTATGCACATGAGAAACGGCGACAAATCTATTCTGTCTCAGTTTGATGTGCAAGCTCTTCTGCTTGAGTATATTAAAAGAAACAAGCTCCGTGATCCACGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTAGGTCATTTTGAGATGTTAAAGCTTCTTGAATCCCATTTCCTCCTAAAAGAAGATTCCCAGACAGAAGATCAGCAGGGGAGTGTTGTTGATACTGAATTTAATCATTTGGAAGGTGATGGAAATATTGATTCCTATCTGAAGACTGGAAAAGACAAGAGACGTAAAACACGAAAAAAAAGTGATGAAAGAGGACTTCAATCCAATACTGATGATTACGCAGCTATTGATAATCATAATATTAATTTAATTTATCTAAGACGCAATTTGGTGGAAGAATTACTTGAAGATATAGATAAGCTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAAGCAGCCGAGCCATATAAAGTTGGTAAAAGGATGACAGATACCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATAATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACAGTGGGTGACGTTCAGGACAAAGCAATGGCACTGCAAGCGGTCAGAGTAAAAGATTGGTTAGAAACCGAGATAGTGAGGCTAAGCCACCTCCGCGATAGAGCCAGTGAGAAAGGACGGAGAAAAGAGCTTAGAGAATGTGTAGAGAAACTGCAGCTTTTGAAAACACCTGAGGAACGTCAGCGGAGATTGGAGGAAATTCCAGAAATACATGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAGGAGGAAGAAGAAACTGATCCTAAACGACTAGAGAGTTACATGAGACCTAGAGGAACTGCATTTGATCGAAGGGGGAGGGAGATGGTTTCTCCAAGGACAGGTGGTTCTAATTCAAATGATCCATGGAGTGGAGCAAGGAACTATTCTAACATTAATCGTGAGCTAACCAGGAATTTGTCTAATAAGGGACTTTCAGTTAAAGTTGATGATGTGTCTAATGCTTCTGAGGTATTGAACGATGTTCAAATGCTCCGGGGAAGAGATAGGGAAGCACAACTATCTAACAGCTGGGAGGGTCAAAAACTATATTCAAGCTTAGAAAGTAGTGGCAAAAGTATACAGCCTGTGGCAGCATCTGATTCTCTTTCTGCCGCTGCGGCTAATGCTTCTGCCGTAACATCTACTACTGGCATAGCATCACCTGCTGTGAAAGTTAATGAAACAGAAAAGATGTGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGCACAGTTACGTAAATGGAATAATACTGGATATTTTCCTGCTGATTTGAGAATTTGGAGAACCACTGAGAAAGAAGATGAGTCTATACTCTTAACTGATGCTTTAGCTGGAAGGTTTTCTAACGAGCCGTCAGCAGTGGATAAAACTTTTCCAAAGGCTCAGTTGGTGCATAATTTGAATTATGCAGCCTCAAACACTGGGAAGCTTCATTTGCCTGCACAACAAGGTGTAGATGCTCAAGTCGGAGGAAGATCAACATTTGATCAGAGTAGTGGGTCCCTTAATTCACATAATGCTATGAGTTCTCCAGGCCAAACTACTGGAGGAAGTTGGAGATTTGAAGATAATAATTCTGTGGCAAATAGGCCTTCTCCAATGACAGTTGAGATTCCCAAGGTCCCTACAAATGTGCGGGGGCCTGATGTTGGTGTTAGAATTGAATCAATGAATCTTCCTTCACCTACTCCTCAGACCACATCTTACGGGACTAAAGGCCAGGCTTTTGAAAATAAATGGTCTCCAACTCCTGTTCACTCTGCTGGTTCTCTTATAGGGAGTCCTTTTCCTGGAGGTCATGGAAGCTTGCAGACCCCTGTCACTGCAGAGAAAGTGGTGCAAAGTGTTGAAAGTCTTTCAAGTTCACAACTTGCTAGGATTCCAGCCCCAAATCCTGGTGTTCCTCTTGGTCATCCTCAAGCAACAATGGTAGCAGCTCTTACAGCCGATGCCTCAAGACATATGGGTGCTGACGGTAAAACTGCAAGTATGCAAAACCTGGCTGTAAGCGACCATAATTCTCATGCTGAAGCTCAAGGTTGGGGATCTGGTTTAGTTCAGAAGCCTGAAATGGCTGGTTCAATTCAGATACGAGGGGGTGAACCACAGGCTTGGGGAGGTGTCCATTCAAGGGTAGAATCAAATAATCTTGCTGCTATGCCTGCCCAACCACCGCTGCCTCATGGCCATTGGGCCGATGCTTCATCTATGCCGAATGCTGCATCATTTAACACTGGAAATCCAATGGGGAATTTCCACATGCCAGGCATTCAAGACTTGAGACCACCAACTTCAAGTAATCAACCTAACACTCCTGCTTCTCTGCCACCCAGCATGCCTTGGGGCATGACTGTTGCAGAAAATCAAAATACTAGTTGGGGGGTAATGCCTGGAAATCCAAATCTAAATTGGGGTGGACCTCCAGCTGCCAATATGAACATGAATTGGATGCCTGGCCAGGGTCCAGCACCAGGAAACGCAAATCCAGGATGGGCTGCTCCTAGTCAGGGACCATCTTCAGTAATCCCTACTGGTTGGGTTGCACCTGGTCAAGGCCATCCTAATGCCAATGGAGGTTGGGTTGTGCCTGGTCAAGGTGCGGCACCTGTTGGTGCTAATCCTGGTTGGGTTGCGCCGGCTGGGGGCCAGGGCATGTGGGGAAATGAACAAAATCATAACGGAGACAGGTTCCCAAACAATAGGGATCGCGGTCCTCATGGGGGTGAATCAGGTTATGGAGGAGATAAAACATGGAACAGGCAGTCTTCGTTTGGTGGTGCTGGCCGGGGAGGAAGTTCTTCAGGGCCTCCTTTTGGTGTGGGGCAGAGAGGAGTGTGCAAATTCCACGAGAGTGGACACTGCAAGAAAGGAGCTTTTTGTGACTATCTTCACACCTGA 5145 0.4566 MTNPAEDPPSPSRCIPPLLEPATVEDMPLARRDDADGAKTLLHCDEAEEKPSSPPIPPAPREVSEEISVADIAVVTKKLEEEAGEAVGSNENEEADKVAIGMESKDAYAACSLGETTETVEAWKVEEETDAADIAEDIKKAEEEANLAYIEEDMTRAEEEANVANIDEDITKVEEETDVANIAEDNKKVEEKTDVAHIADDNTKVEEETNVDNIAEDITKVKEDADVADIVEVEEDEAASSYEKEEAGKVVARTEPADTFVACSLGETTEMVEIREVDEEADEDGMPDENEEAEKVAVGMEMEDGSVASTLGETTEADKLGTEAEDKEEAAEVLNVMGTMEGTTDTEEDADGVGGREEALEAEEMGVANEGDLMEEDVDAAEVAEYAGGAELTEEMEVAEEQGSSISSAKRKRGKSSKSAVKVPVRKKVEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSNCGKSSYYMCYTCTFSLCKGCIKDAVIFCVRGKNGFCETCMRTVMLIEQNELGNKDMGQVDFDDKSSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWKGSDVLLTKQESPDELYDANNDEGSHSDNSSENLESSSVKRRKANKRLKSRSKEVNSHSTMALIDDKGPSADERSEWASKELLEFVMHMRNGDKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEFNHLEGDGNIDSYLKTGKDKRRKTRKKSDERGLQSNTDDYAAIDNHNINLIYLRRNLVEELLEDIDKLHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDVQDKAMALQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHADPNMDPSYESEEEEETDPKRLESYMRPRGTAFDRRGREMVSPRTGGSNSNDPWSGARNYSNINRELTRNLSNKGLSVKVDDVSNASEVLNDVQMLRGRDREAQLSNSWEGQKLYSSLESSGKSIQPVAASDSLSAAAANASAVTSTTGIASPAVKVNETEKMWHYKDPSGKVQGPFSMAQLRKWNNTGYFPADLRIWRTTEKEDESILLTDALAGRFSNEPSAVDKTFPKAQLVHNLNYAASNTGKLHLPAQQGVDAQVGGRSTFDQSSGSLNSHNAMSSPGQTTGGSWRFEDNNSVANRPSPMTVEIPKVPTNVRGPDVGVRIESMNLPSPTPQTTSYGTKGQAFENKWSPTPVHSAGSLIGSPFPGGHGSLQTPVTAEKVVQSVESLSSSQLARIPAPNPGVPLGHPQATMVAALTADASRHMGADGKTASMQNLAVSDHNSHAEAQGWGSGLVQKPEMAGSIQIRGGEPQAWGGVHSRVESNNLAAMPAQPPLPHGHWADASSMPNAASFNTGNPMGNFHMPGIQDLRPPTSSNQPNTPASLPPSMPWGMTVAENQNTSWGVMPGNPNLNWGGPPAANMNMNWMPGQGPAPGNANPGWAAPSQGPSSVIPTGWVAPGQGHPNANGGWVVPGQGAAPVGANPGWVAPAGGQGMWGNEQNHNGDRFPNNRDRGPHGGESGYGGDKTWNRQSSFGGAGRGGSSSGPPFGVGQRGVCKFHESGHCKKGAFCDYLHT 1714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 1501 1527 - -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 971 998 - -
Pral4803g00081 1714 SMART PHD_3 433 479 IPR001965 -
Pral4803g00081 1714 SMART swib_2 664 735 IPR019835 -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 593 650 - -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 1239 1293 - -
Pral4803g00081 1714 SUPERFAMILY GYF domain 1130 1192 IPR035445 -
Pral4803g00081 1714 ProSitePatterns Zinc finger PHD-type signature. 434 494 IPR019786 -
Pral4803g00081 1714 ProSiteProfiles GYF domain profile. 1139 1193 IPR003169 GO:0005515
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 1664 1678 - -
Pral4803g00081 1714 SUPERFAMILY FYVE/PHD zinc finger 416 479 IPR011011 -
Pral4803g00081 1714 SMART gyf_5 1140 1195 IPR003169 GO:0005515
Pral4803g00081 1714 SUPERFAMILY SWIB/MDM2 domain 653 731 IPR036885 -
Pral4803g00081 1714 ProSiteProfiles SWIB/MDM2 domain profile. 649 732 IPR003121 -
Pral4803g00081 1714 Pfam GYF domain 1142 1184 IPR003169 GO:0005515
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 306 327 - -
Pral4803g00081 1714 CDD PHD5_NSD 433 478 - -
Pral4803g00081 1714 ProSiteProfiles Zinc finger PHD-type profile. 431 497 IPR019787 -
Pral4803g00081 1714 SUPERFAMILY Plus3-like 792 921 IPR036128 GO:0003677
Pral4803g00081 1714 SMART rtf1 791 901 IPR004343 GO:0003677
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 26 50 - -
Pral4803g00081 1714 Gene3D - 1140 1199 IPR035445 -
Pral4803g00081 1714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 525 IPR013083 -
Pral4803g00081 1714 CDD SWIB-MDM2_like 655 730 - -
Pral4803g00081 1714 FunFam Zinc finger CCCH domain-containing protein 19 643 737 - -
Pral4803g00081 1714 Pfam SWIB/MDM2 domain 657 730 IPR003121 -
Pral4803g00081 1714 Pfam Plus-3 domain 796 899 IPR004343 GO:0003677
Pral4803g00081 1714 CDD GYF 1139 1196 IPR003169 GO:0005515
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 1017 1036 - -
Pral4803g00081 1714 ProSiteProfiles Plus3 domain profile. 791 924 IPR004343 GO:0003677
Pral4803g00081 1714 FunFam Zinc finger CCCH domain-containing protein 19 1141 1198 - -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 1 65 - -
Pral4803g00081 1714 Gene3D - 793 921 IPR036128 GO:0003677
Pral4803g00081 1714 ProSiteProfiles Zinc finger C3H1-type profile. 1694 1714 IPR000571 GO:0046872
Pral4803g00081 1714 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 273 1714 - -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 757 782 - -
Pral4803g00081 1714 FunFam Zinc finger CCCH domain-containing protein 19 792 921 - -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 1635 1685 - -
Pral4803g00081 1714 Coils Coil 124 192 - -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 1021 1036 - -
Pral4803g00081 1714 Gene3D SWIB/MDM2 domain 643 740 IPR036885 -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 1239 1281 - -
Pral4803g00081 1714 MobiDBLite consensus disorder prediction 971 985 - -
Pral4803g00081 1714 FunFam Zinc finger CCCH domain-containing protein 19 423 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00081 Pral-Chr4803 403996 413547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00081 386 502 PHD Transcription Factor Family AT5G58610 28.906 1.02e-07 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pral4803g00081 Plus-3 7.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4803g00081 - - pcin:129284774 2823.11