Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4803g00077 ATGCGAACACTCTGTGATGTTTGTGAGAGCGCTGCAGCGATCATCTTCTGTGCCGCAGACGAAGCTGCTTTATGCCGTGCATGTGACGAAAAGGTCCATACATGCAACAAGCTTGCTAGCAAACATGTTCGAGTTGGGTTGGCTGATCCCAGTGATGTTTCCCGCTGTGATATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGACATGATAGTACATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTGTTGAGGCAAAGAGCTGAGTTTCCAGGGTACAAACCTGGTCGATTGGAAGAACTAGGGCTGCAACCCCTTGATCAAAATGGACTAAAGAAGGACCCAAGTCATCCCCTTCTTATAACAAGAGAAGGCCAGCAGAACCATAGAATCTCACCTACTCCAATTCTAGAAAATAATGTTGATGATCATGGAAAGATGGATAAAAAACTAATTGATCTTAATACTAGACCACAGCGGTTAAATGGACCAACATCAAACAATCAGGAACCTGAACAGGAATCGGCCATGGATATTTCTAGTGGCAATAACAATGAATCTGTGGTACCAGTAGAATCCTTCAAACGTAGGGCTGAGGAGAAATAA 645 0.431 MRTLCDVCESAAAIIFCAADEAALCRACDEKVHTCNKLASKHVRVGLADPSDVSRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRAEFPGYKPGRLEELGLQPLDQNGLKKDPSHPLLITREGQQNHRISPTPILENNVDDHGKMDKKLIDLNTRPQRLNGPTSNNQEPEQESAMDISSGNNNESVVPVESFKRRAEEK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4803g00077 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pral4803g00077 214 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pral4803g00077 214 SMART bboxneu5 51 96 IPR000315 GO:0008270
Pral4803g00077 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 180 - -
Pral4803g00077 214 CDD Bbox1_BBX-like 56 96 - -
Pral4803g00077 214 FunFam B-box zinc finger protein 19 2 92 - -
Pral4803g00077 214 Gene3D Classic Zinc Finger 2 95 - -
Pral4803g00077 214 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Pral4803g00077 214 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Pral4803g00077 214 CDD Bbox1_BBX-like 4 47 - -
Pral4803g00077 214 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Pral4803g00077 214 MobiDBLite consensus disorder prediction 171 203 - -
Pral4803g00077 214 MobiDBLite consensus disorder prediction 167 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4803g00077 Pral-Chr4803 374864 378270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4803g00077 1 213 C2C2-CO-like Transcription Factor Family AT4G38960 57.674 4.38e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pral4803g00077 zf-B_box 5.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4803g00077 - - gmx:100527369 322.013