Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4800g00040 ATGTTTGTTTGCTTCGTGTTTTTGGGCAACAGTTACCAGAGCCTCCCGGCTTCTCCCAACCACATTAACGCAAAAGGCAAGCACCACTATTACTCCCTCGACACCCGCTATCTCCTCTTTTCTTCTCCAGACATTCAATTCCTGCCCACCTCTCTTCCACAAATACTCCACAGCTTTGCTGCCGCTATTTCCAGCTTCAAATGGATCGTCATGATGAATACCCCATGCCCCTGCCTTCTGCCCCCACTCCCCTTAACAGACCCTTCCTACGATGGAATCATGGAACTCTTCTGGCAAAACGGCCCCGTCGCTTTGCCCAGCTTAAACCATCGGACTCTCAGAAAACCTCCGCCGCCCAAGCCGTCCGGAGATGTGACTGCTTCGGGGCCGTCTACGGCGACGGAGATTGAGATTGGACCCTCACCCCAAGCGGAAAACTACAGCAACCAACATCTGTTCGTGCAAGAAGACGAAATGGCTTCCTGGCTTCACTGCCCCATCGTCGACGATTCTCCCCTGGATCACAATTTCAGTGCGGACCTCCTCTACTCGCCACACACCGCCGTCAACAACAGTGCCACCATGCAAACCAATGTCAGAGCACCTCAGGTGACGGAGTTCGGGCAGCCTTCGACGTCATTAGCTACTCCTACGCCCCCTATACCTCCGACATGGGGGCCACAGGCTAAGATGCAAGAATCCGAGCACTTCTCGAAACACAATGCCAGAGTTGAATCAGGGCCATCGAGGTCAAGGACCGCGGCTAGGGAATCGACGGCGGTGGATTCATGCGACACTCTTGCAGTCGTGGCGACTCCCAGAGTCTCGGACGCCGTGAGAAGCACGGCGGAGCCAACCAAAGGAGCCGCCTGTCGAGGGAGCACGAGTACTACAGGGATTGCAGGGCCTTCGACTACGACAGCCGGTGGAGGAACGGAGGTGATGGCGTGTGAGATGACGGCAACTTCGTCGCCCGGAGGGTCAACTAGGAGTGCAGAACTGTCTGACAGGTCGCCGGCGGAGGATCGGAAGCGGAAGGGGCGGGAAGCCGATGACTCAGAGTGTCACATCGAGGATTTGGATTACGAATCTGCGGAGGCAAGAAAACAAGCTCGCGGATCGAAATCAACGAAGAGATCCCGTGCTGCGGAGGTCCATAATCTATCGGAGAGGAGACGTCGAGATAGGATTAAGGAAAAGATGAGAGCTTTACAAGAACTTATTCCTCGGTGCAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCATTGCAGTTACAAGTTCAGATGATGTCCATGGGATATGGAATGTTACCCATGATGTACCCAGGAATGCAGCAGTACATGCCAGCAATGGGAATGGGCATGGTGGGCATGGAAATGGGAATGAACAGACCAGTGATGCCGTTTACTAATATCGCGGCCGCCACCGCAGTTCCCGCTTATATGGGACCAAGGTCCTTTTCTGTGCCTCCTCCTTTCCATGTTGCTGCACCTGATTTATCCAGCATGCAAGCAGCAAACAAGCCAGATAACATGCTTCCCTCGCTGACTTCATCTGATCCTATTCACTCACGGATCCCAAACCTCACTCAAGCTTATCACCAATACCTTGGTCCCCACCAGATTCAGTGCCATTTAATGCAGAATCAGACAATGATGCAACCAGATATCGGCAAGCCAGGTACCAGTAGGGCCCGTGAGAATCCAGAAAATCATCAGCCAGAAAATGGATGA 1755 0.5288 MFVCFVFLGNSYQSLPASPNHINAKGKHHYYSLDTRYLLFSSPDIQFLPTSLPQILHSFAAAISSFKWIVMMNTPCPCLLPPLPLTDPSYDGIMELFWQNGPVALPSLNHRTLRKPPPPKPSGDVTASGPSTATEIEIGPSPQAENYSNQHLFVQEDEMASWLHCPIVDDSPLDHNFSADLLYSPHTAVNNSATMQTNVRAPQVTEFGQPSTSLATPTPPIPPTWGPQAKMQESEHFSKHNARVESGPSRSRTAARESTAVDSCDTLAVVATPRVSDAVRSTAEPTKGAACRGSTSTTGIAGPSTTTAGGGTEVMACEMTATSSPGGSTRSAELSDRSPAEDRKRKGREADDSECHIEDLDYESAEARKQARGSKSTKRSRAAEVHNLSERRRRDRIKEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGYGMLPMMYPGMQQYMPAMGMGMVGMEMGMNRPVMPFTNIAAATAVPAYMGPRSFSVPPPFHVAAPDLSSMQAANKPDNMLPSLTSSDPIHSRIPNLTQAYHQYLGPHQIQCHLMQNQTMMQPDIGKPGTSRARENPENHQPENG 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4800g00040 584 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 459 IPR036638 GO:0046983
Pral4800g00040 584 PANTHER TRANSCRIPTION FACTOR PIF3 91 238 IPR044273 GO:0003700|GO:0006355
Pral4800g00040 584 MobiDBLite consensus disorder prediction 125 143 - -
Pral4800g00040 584 Coils Coil 387 407 - -
Pral4800g00040 584 FunFam Basic helix-loop-helix transcription factor 376 439 - -
Pral4800g00040 584 SMART finulus 387 436 IPR011598 GO:0046983
Pral4800g00040 584 MobiDBLite consensus disorder prediction 335 395 - -
Pral4800g00040 584 MobiDBLite consensus disorder prediction 560 584 - -
Pral4800g00040 584 CDD bHLH_AtPIF_like 381 443 IPR047265 -
Pral4800g00040 584 MobiDBLite consensus disorder prediction 208 261 - -
Pral4800g00040 584 MobiDBLite consensus disorder prediction 570 584 - -
Pral4800g00040 584 Pfam Helix-loop-helix DNA-binding domain 385 431 IPR011598 GO:0046983
Pral4800g00040 584 MobiDBLite consensus disorder prediction 110 143 - -
Pral4800g00040 584 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 381 430 IPR011598 GO:0046983
Pral4800g00040 584 MobiDBLite consensus disorder prediction 288 334 - -
Pral4800g00040 584 MobiDBLite consensus disorder prediction 277 395 - -
Pral4800g00040 584 Gene3D - 376 439 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4800g00040 Pral-Chr4800 200316 203989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4800g00040 91 436 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.033 4.88e-57 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4800g00040 HLH 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4800g00040 - - pcin:129287665 461.455