Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral479g00014 ATGACTATTGCTGACTGGAAGTCGGAGTCGGTTTGTGCTGCAAAGTTGAAGGGAAAGCTGAACGGAAAAACGCCAACTGGGGAAGCATCAGGAGAGGTGAACTGGTGTGCGTTTCCAAGGAAGATGACACAGCAACGCCACGTGGAGCTGAGTTGGAAACAAATCTTTGCCACTTATTGCTCTGTTCAGCAATACGATCATCATGATCCTTCATCTTTCACTTCTATCATGACGAATAATGTCTCCTTCGCGTCAAGCTCTGCTGCTTCAAACCCTAACTGCGACATTACTGCTTCGCTTGAGCAGGCTCCGGGCAACTCCAGTGGCACGGTGTTTTCCAGCGAGCATGAAGGCACCATGAAACCATCAGCAGGTGGCGACAGGGCTGATAATAATGTTAGTAGTAAGGCAGATTCTGTGGCGCGTGAAAGGAACGCGCCGCCTAGATGGAGGAATTACAGAGGTGTAAGGCGTCGGCCGTGGGGGAAGTTTGCAGCTGAGATCCGGGATCCGAAGAGGAACGGAGCAAGAACGTGGTTAGGGACATATGAGACGGAAGAGGATGCAGCATTGGCTTATGATAGAGCTGCTTTTAAGATGAGGGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATTGGGTCGGAATCGCGGCCAGAGCTACCGGAAAGATTAGTCAGCGAGACGACACGGCAGTGCCACTCGCCGGAATCTTCATCGCCGTCAGTGTGCGCATCTGAGGATAACGGTGGATCTCAAGGATCAAGTAGTAGGAAGAAGAGGCTGACTAGTCTGTTGAATAAATTAGCAACAAATAGAGGCCAAGGCAGAAGCTTGAAATAA 843 0.5006 MTIADWKSESVCAAKLKGKLNGKTPTGEASGEVNWCAFPRKMTQQRHVELSWKQIFATYCSVQQYDHHDPSSFTSIMTNNVSFASSSAASNPNCDITASLEQAPGNSSGTVFSSEHEGTMKPSAGGDRADNNVSSKADSVARERNAPPRWRNYRGVRRRPWGKFAAEIRDPKRNGARTWLGTYETEEDAALAYDRAAFKMRGRKAKLNFPHLIGSESRPELPERLVSETTRQCHSPESSSPSVCASEDNGGSQGSSSRKKRLTSLLNKLATNRGQGRSLK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral479g00014 280 MobiDBLite consensus disorder prediction 228 280 - -
Pral479g00014 280 MobiDBLite consensus disorder prediction 214 280 - -
Pral479g00014 280 MobiDBLite consensus disorder prediction 95 117 - -
Pral479g00014 280 FunFam Ethylene-responsive transcription factor 2 151 211 - -
Pral479g00014 280 CDD AP2 152 212 IPR001471 GO:0003700|GO:0006355
Pral479g00014 280 PANTHER DNA-BINDING DOMAIN 106 252 IPR044808 GO:0003700|GO:0009873
Pral479g00014 280 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Pral479g00014 280 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Pral479g00014 280 SUPERFAMILY DNA-binding domain 152 211 IPR016177 GO:0003677
Pral479g00014 280 Pfam AP2 domain 152 202 IPR001471 GO:0003700|GO:0006355
Pral479g00014 280 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Pral479g00014 280 MobiDBLite consensus disorder prediction 95 145 - -
Pral479g00014 280 Gene3D AP2/ERF domain 151 211 IPR036955 GO:0003700|GO:0006355
Pral479g00014 280 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral479g00014 Pral-Chr479 126391 128245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral479g00014 153 248 AP2-EREBP Transcription Factor Family AT2G44840 59.633 6.07e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral479g00014 AP2 7.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral479g00014 K09286 - pcin:129296372 177.563