Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral479g00006 ATGAACTCTAATTATTCTCCTTTCGAATCATCAGTTCAACAATACCTGATCGAAGAAGACGATCCTTCCTCCTCGATGGCTCTCATGAATGGCGTCTTCACTGGCAGCAACCGTACTTCGAATCTGGACTGTGACATGGCTTCGCCGGAGCAGGGAGTTAGCAGCTCCACTGGCACGGTGTTTTCCGGCGAGGATGACAACGCTACGAAACCAGGTGATGATGACAGAGTGAACGGTAGTGATCCGGAATCTGCGGCGCGTGAAGGGAACGCGCCACCAAGATGGAGGAATTACCGAGGTGTGAGGCGGCGGCCGTGGGGGAAGTTCGCTGCTGAGATCCGGGACCCGAATAGAAACGGTGCAAGGACGTGGCTGGGAACTTATGAGAAGGAAGAGGATGCAGCTCTGGCTTATGATAGAGCCGCTTTCAAGATGCATGGTAGAAGAGCCAAGCTCAATTTTCCTCACCTCGTTGGGTCGGAGACACCGCGGGAGCCGGCAGCAAGAGTCGTGGCTGGACAGAAACGGCACAGCTCGCCGGAACCTTCGTCGCCGTCAAACAAGACATCTGAGGATGACGGATCTCAAGGGTCAAGCAAGAAGAAGAGCCTGACCGAACTATTGAACAAGTTAGCAGCAAATAGAAGCCGTGTCAGATTGGGTTGA 666 0.536 MNSNYSPFESSVQQYLIEEDDPSSSMALMNGVFTGSNRTSNLDCDMASPEQGVSSSTGTVFSGEDDNATKPGDDDRVNGSDPESAAREGNAPPRWRNYRGVRRRPWGKFAAEIRDPNRNGARTWLGTYEKEEDAALAYDRAAFKMHGRRAKLNFPHLVGSETPREPAARVVAGQKRHSSPEPSSPSNKTSEDDGSQGSSKKKSLTELLNKLAANRSRVRLG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral479g00006 221 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Pral479g00006 221 MobiDBLite consensus disorder prediction 27 64 - -
Pral479g00006 221 MobiDBLite consensus disorder prediction 67 82 - -
Pral479g00006 221 MobiDBLite consensus disorder prediction 1 20 - -
Pral479g00006 221 CDD AP2 97 157 IPR001471 GO:0003700|GO:0006355
Pral479g00006 221 Gene3D AP2/ERF domain 96 157 IPR036955 GO:0003700|GO:0006355
Pral479g00006 221 FunFam Ethylene-responsive transcription factor 2 96 156 - -
Pral479g00006 221 MobiDBLite consensus disorder prediction 156 221 - -
Pral479g00006 221 MobiDBLite consensus disorder prediction 177 193 - -
Pral479g00006 221 SUPERFAMILY DNA-binding domain 97 156 IPR016177 GO:0003677
Pral479g00006 221 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Pral479g00006 221 PRINTS Ethylene responsive element binding protein signature 137 157 IPR001471 GO:0003700|GO:0006355
Pral479g00006 221 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Pral479g00006 221 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Pral479g00006 221 MobiDBLite consensus disorder prediction 1 100 - -
Pral479g00006 221 PANTHER DNA-BINDING DOMAIN 59 202 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral479g00006 Pral-Chr479 47751 48416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral479g00006 68 191 AP2-EREBP Transcription Factor Family AT2G44840 54.762 1.36e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral479g00006 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral479g00006 K09286 - pcin:129296372 204.912