Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral479g00004 ATGATCCCTAATCTTTCTCCTTTAGATTCAGTTCAGCAATATCTTCTTCAGGATGATCCTTCCTCTATGATTCTCATGAACGTCTTCCTCACGAGTAATAATAACCCTAGTTTTAACCCTAGCCGCGATAATTCTTCGCCGGAGCAGGACGCTAGTAACTCAAGTGGCACTGCTTTTTCCGCCGAGCATGACGATGGTGTGAGATCTCCGGCAGGTGATCATAGGGTTGATAATGTTAGCAATGCAGGATCTGTGGTGCGTGAAGGGAACGCGCCACCGAGATGGAAGAATTACAGAGGTGTGAGGCGGCGGCCGTGGGGGAAGTTCGCGGCTGAGATCCGGGATCCGAAGAAGAACGGTGCAAGGATATGGTTGGGAACTTATGAGAGGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAGGGGTAGAAAAGCCAAGCTGAATTTTCCTCACCTCATTGGATCGGAGCCACTACCGGAGCCGCCAAGAGTGGTTGCTGGACAGAAGCGGCGCCGCTCACCGGAACCTTCATGGGCATTGGGGAATACATCTGAGGATGGTGGATCTCAAGGGTTAAGGAAGAGGAAGAACTTGGCTGGGTTATTGAATAAGTTAGCAACAAATGGAAATCTAAGCCAGAAGCTTGAAATGGCATTGATGAAGGCATAG 684 0.4942 MIPNLSPLDSVQQYLLQDDPSSMILMNVFLTSNNNPSFNPSRDNSSPEQDASNSSGTAFSAEHDDGVRSPAGDHRVDNVSNAGSVVREGNAPPRWKNYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYEREEDAALAYDRAAFKMRGRKAKLNFPHLIGSEPLPEPPRVVAGQKRRRSPEPSWALGNTSEDGGSQGLRKRKNLAGLLNKLATNGNLSQKLEMALMKA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral479g00004 227 MobiDBLite consensus disorder prediction 35 98 - -
Pral479g00004 227 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Pral479g00004 227 PRINTS Ethylene responsive element binding protein signature 137 157 IPR001471 GO:0003700|GO:0006355
Pral479g00004 227 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Pral479g00004 227 SUPERFAMILY DNA-binding domain 97 156 IPR016177 GO:0003677
Pral479g00004 227 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Pral479g00004 227 PANTHER DNA-BINDING DOMAIN 54 188 IPR044808 GO:0003700|GO:0009873
Pral479g00004 227 MobiDBLite consensus disorder prediction 35 60 - -
Pral479g00004 227 FunFam Ethylene-responsive transcription factor 2 96 156 - -
Pral479g00004 227 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Pral479g00004 227 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Pral479g00004 227 MobiDBLite consensus disorder prediction 158 197 - -
Pral479g00004 227 CDD AP2 96 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral479g00004 Pral-Chr479 22721 23670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral479g00004 89 190 AP2-EREBP Transcription Factor Family AT2G44840 71.154 2.06e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral479g00004 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral479g00004 K09286 - pcin:129296372 202.601