Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4799g00003 ATGGCAGCACGCACTACTTCCTCCATTGAAAGATCAAGCACCAAGCAGCTCAATAACATCGGTTTGTCTGGACCATTGCCATCATCCTTGTCAGTCCGTCCGACTCCGATAGGAGAGACATTTGCCAAGTTTTCTGATTCTCAGCCGGCTGTCATGGCAAAAGAGCTTATGGCTGGGTCTATAACTCAGCCGAGTCATTTAAATTCCAGCGGAGCAATTGGGCACATATTTTCATCTTCTCCTGGATATTCGACTGATCTTCATCACTCATCTCTTTTGCCGCATGAAAAACACTCAACAAATGCTCATTCCATTTCTCAGTCATCCAACATGGCTTCGTTGCCCTTTTCTTATTCTTCCAATAGTGGACCGCTTCCTTCTTCAACACCAAATAATTATTTCAAAGAAAACAGTGCTTCCTGGAATATAGAACCCCTGTCCAACTTTCTTGATTTTCCTGTGAATACTACCATTGAGAATAGTCCAGCAGAAAACAGTGCCTGCACTGTCATGGCATCTGAGGAGTACTGTAAGCGAAATGAATGGCAAGAGTGGGCTGATCAGCTTATAAGTGAAGACGATCCTTTGACTTCTAATTGGAATGACCTTCTTACTGACAACATTCAAGATCTTGAGCCAAAGGTTTCACATGTTCCAGGAAACCAGTCCCAAGGTCAGCAGCTACTTCCAGCTTCATCTGGAGACAATTGCTTTGGTGCTCCCCCTGCTTCGTCAGCAAGTTCTGCTCCTGCCAAGCCACGGATGCGATGGACACCAGAGCTTCATGAGGCTTTTGTGGAGGCTGTCAACAAACTTGGTGGCAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACGATATATCATGTTAAAAGTCACTTGCAGAAATACAGGACTGCTAGATATAGACCGGAACCATCTGAAGGATCCTCAGAGAAACGACTGACCATTGAGGACATGCCTCCTCTAGACCTGAAAACTGGTATTGAGATCACTGAAGCCCTGCGACTGCAGATGGAGGTTCAGAAGCGGCTGCATGAGCAACTTGAGATTCAACGAAACCTACAACTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAATGCAAATCTGGCACTGACAAGAAGGCATCACCGGCATCTGCGACAGAGAAGCCATCGGGAGTGTCTTCAGACGCTATCAAAGATTGTGCTGCCAAAGGTGAAGTGGAAGCCTCCCAAGTGGAGGGTGATTGCAAGTCGGGACGTGATCAAGCCAATAACAGTACTGCAGTTGAGGAAAGGTCTCTGGAAGTGGGTATGAAGAATGATGGCCCTGAAAATCAAGCTTCTGAGAATCCTAGGCAACAAGCCGGTGAGGAGAGTGCTCCAGCCTCAAAGAGGCAGAGAACAGACGAGTAA 1437 0.4642 MAARTTSSIERSSTKQLNNIGLSGPLPSSLSVRPTPIGETFAKFSDSQPAVMAKELMAGSITQPSHLNSSGAIGHIFSSSPGYSTDLHHSSLLPHEKHSTNAHSISQSSNMASLPFSYSSNSGPLPSSTPNNYFKENSASWNIEPLSNFLDFPVNTTIENSPAENSACTVMASEEYCKRNEWQEWADQLISEDDPLTSNWNDLLTDNIQDLEPKVSHVPGNQSQGQQLLPASSGDNCFGAPPASSASSAPAKPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPEPSEGSSEKRLTIEDMPPLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGTDKKASPASATEKPSGVSSDAIKDCAAKGEVEASQVEGDCKSGRDQANNSTAVEERSLEVGMKNDGPENQASENPRQQAGEESAPASKRQRTDE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4799g00003 478 SUPERFAMILY Homeodomain-like 250 306 IPR009057 -
Pral4799g00003 478 MobiDBLite consensus disorder prediction 1 32 - -
Pral4799g00003 478 MobiDBLite consensus disorder prediction 383 478 - -
Pral4799g00003 478 Pfam Myb-like DNA-binding domain 254 305 IPR001005 -
Pral4799g00003 478 Coils Coil 339 359 - -
Pral4799g00003 478 MobiDBLite consensus disorder prediction 451 469 - -
Pral4799g00003 478 Gene3D - 251 310 - -
Pral4799g00003 478 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 230 463 IPR044848 GO:0003700
Pral4799g00003 478 MobiDBLite consensus disorder prediction 425 439 - -
Pral4799g00003 478 NCBIfam myb-like DNA-binding domain, SHAQKYF class 252 306 IPR006447 GO:0003677
Pral4799g00003 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 309 IPR017930 -
Pral4799g00003 478 MobiDBLite consensus disorder prediction 386 400 - -
Pral4799g00003 478 Pfam MYB-CC type transfactor, LHEQLE motif 336 383 IPR025756 -
Pral4799g00003 478 FunFam Myb family transcription factor 251 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4799g00003 Pral-Chr4799 16371 20475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4799g00003 9 397 G2-like Transcription Factor Family AT4G28610 48.403 2.97e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4799g00003 Myb_DNA-binding 4.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4799g00003 - - gmx:100810560 626.32