Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4798g00040 ATGGGGCATAGAATCAGAGCAGACAGGAAAGGCAATACCAACAAGGGTGTGCGGAAGGTAATGAAGTGCCTATGCTCAGAGGAGCCATTAAGAGAAGAAGATGATAACAGCATCGAGGAAGTTGAATCATCCCTTTGTGGAAGTGGCTGTTTGAATTATGAGGAAGCTAGAGCTCGTTTGGGAAAATGTGAATATCAGAAAGGAAATATAGAAGCTGCTGTGCATGTTTTTGAGCAAATAGATACGGAGGTTGTAGCTTCCATGATTAAAAGTTCTCTTGCCAAAAGGGGAACGCACCACGAGAGACTTTCCCAGAATCATGCTACGCGGTCATTGTCCATTCATTCTGTTGGCTTACTGTTGGAAGCATTCTTCTTAAAAGCAAAGTCTTTGCAGGCTCTTGGAAAGTTTAAAGAAGCTGCCCTATCTTGCAAAGTTATTCTGGACATGGCCGAATCTTCATTACCCCGAGGCTTGCCTGAAAACTTTGGTGTTGGATGTAAATTGCAGGAGACTCTGAGTAGCGTGATTGAGTTGCTTCCTCACTTGTGGAAACTTGCAGATAGTCCACATGAAGCTATTATGTCATACCGACGGGCACTTCTTCATAAGTGGAATCTTGACGCAAAAGTCACAGCAAAGATTCAGAAAGAGTTTGCTGTTTTTCTTCTATATAGTGGAGTGGAAGCAAGTCCTCCCAGTCTTCGTTCCCAAATGGACACCTCATATGTACCCAGAAATAACATAGAAGAGGCTATACTTCTTTTGATGATTCTGTTAAGACAGGTCTGTTCCAATAGAATTGAGTGGGATCCTTCAATTTTGGATCATCTTTCATTTGCTTTGTCTGTTTCAGGGGATTTGACAGCTTTAGCCAATCAATTGGAACAATTGCTCCCCTCCTCTGTCAATCCAACAGAAAAGTGCCAAACACTTGCTTTTTGTTATTATGGAGCAGGTCAGGACTTGGTGGCACTGGGACTTCTTAGAAAAATGTTATGTAGCAGAGAGGACCCAAAACATGTTTCAGGTTTGTTAATGGCAGCAAAGATTTGTTGTGAGAACCCTAGTCTTGCTGGAGAAGGGGTAAGTTTTGCTCGCAGATTGCTTGAGAAATTGGAAGGAAGATGTGATCAATTAGCAAGTTCTGCCTATTGCTTCCTTGGTCTATCATTTTCAGCACATTCAAAATCGTCCATTTCTGATTCAGAGAGGTACAGACGACAATCTGAGGCACTTCACAACCTGGAAGTTGCCTCCAGAATGACAAGAATGAGAAACCCGCTGATCCAATACCATCTCAGTTTAGAATATGCTGAACAGAGAAAGTTGGATGCTGCCCTTGATTATGCCAAATGCTTGCTAGAACTGGAAGCAGGGTCTAATATTAAAGGGTGGTTACTACTGGCCAGGATATTATCAGCTCAAAGTCGATTTTTGGATTCTGAATCTGTTATCAATGCTGCTTTGGACCAGACTGGGAAATGGGATCAAGGAAATTTGCTGCGAACAAAAGCTAAACTTCAGATTGCGCAGGGCCGTTTAAGGAGTGGCATCGAAACGTATATTCAGCTTCTTGCTGTTCTTCAAATTCAGAGCACAAACTTTGGTTCTGAGGAAAAGCTAAATAAGGACGTCAAAGATGATACCCAGAGATTGGAAATGGAAATATGGCATGATCTTGCCTTCTTATACATAAGCCAGTCAAAATGGCATGATGCAGGAGCGTGTCTTTCAAAGTCTAAGGGCATCAAACTATACTCTGCTTCTAGATGTCATGCAACCGGTCTGATATATGAAGCAAAGGGCCTTTATAAAGAGGCTCTAAAAGCTTATCGTGAAGCTTTGGATATTGATCCCAATCACGTCCCAAGCTTGATTTCTAATGCGTTGGTTCTCAGAAGGTGCAGTAAAGAATTGAATGCTGCAGTTCGAGGGTACCTGATGGATGCTCTACGGCATGACAGAATGAATGCTTCTGCTTGGTACCATCTTGGCATTCTTCACAAGGCTGAGGGTACAATATCTTCATTAGTGGAAGCCATGGAATGCTTCAAGGCTGCACAATATCTCGAAGAAACTGCACCAGTTGAGCCTTTCAGATGA 2106 0.425 MGHRIRADRKGNTNKGVRKVMKCLCSEEPLREEDDNSIEEVESSLCGSGCLNYEEARARLGKCEYQKGNIEAAVHVFEQIDTEVVASMIKSSLAKRGTHHERLSQNHATRSLSIHSVGLLLEAFFLKAKSLQALGKFKEAALSCKVILDMAESSLPRGLPENFGVGCKLQETLSSVIELLPHLWKLADSPHEAIMSYRRALLHKWNLDAKVTAKIQKEFAVFLLYSGVEASPPSLRSQMDTSYVPRNNIEEAILLLMILLRQVCSNRIEWDPSILDHLSFALSVSGDLTALANQLEQLLPSSVNPTEKCQTLAFCYYGAGQDLVALGLLRKMLCSREDPKHVSGLLMAAKICCENPSLAGEGVSFARRLLEKLEGRCDQLASSAYCFLGLSFSAHSKSSISDSERYRRQSEALHNLEVASRMTRMRNPLIQYHLSLEYAEQRKLDAALDYAKCLLELEAGSNIKGWLLLARILSAQSRFLDSESVINAALDQTGKWDQGNLLRTKAKLQIAQGRLRSGIETYIQLLAVLQIQSTNFGSEEKLNKDVKDDTQRLEMEIWHDLAFLYISQSKWHDAGACLSKSKGIKLYSASRCHATGLIYEAKGLYKEALKAYREALDIDPNHVPSLISNALVLRRCSKELNAAVRGYLMDALRHDRMNASAWYHLGILHKAEGTISSLVEAMECFKAAQYLEETAPVEPFR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4798g00040 701 Gene3D Tetratricopeptide repeat domain 35 541 IPR011990 GO:0005515
Pral4798g00040 701 PANTHER PROTEIN NPG1 29 701 IPR043376 -
Pral4798g00040 701 Gene3D - 542 698 - -
Pral4798g00040 701 Pfam Tetratricopeptide repeat 592 622 IPR013105 -
Pral4798g00040 701 ProSiteProfiles TPR repeat profile. 589 622 IPR019734 GO:0005515
Pral4798g00040 701 SUPERFAMILY TPR-like 426 527 IPR011990 GO:0005515
Pral4798g00040 701 SMART tpr_5 121 154 IPR019734 GO:0005515
Pral4798g00040 701 SMART tpr_5 659 695 IPR019734 GO:0005515
Pral4798g00040 701 SMART tpr_5 589 622 IPR019734 GO:0005515
Pral4798g00040 701 SMART tpr_5 463 496 IPR019734 GO:0005515
Pral4798g00040 701 SMART tpr_5 428 461 IPR019734 GO:0005515
Pral4798g00040 701 SUPERFAMILY TPR-like 554 673 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4798g00040 Pral-Chr4798 297264 301717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4798g00040 15 701 Calmodulin-binding Proteins AT4G28600 52.394 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4798g00040 K21843 - gmx:100800762 933.324