Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4798g00022 ATGCCGTCCCTGATTACTCCTGGGAAAATCCATCGCTTGGAGATGGAAAATTTCAAGTCTTACAAGGGGCTTCAAGTTATTGGTCCCTTCTACGACTTCACCGCGATTATTGGCCCCAATGGTGCGGGCAAGTCCAACCTTATGGACGCCATTAGCTTTGTGCTCGGGGTAAGGACAGGCCAGCTGCGTGGTGCTCAACTCAAGGACTTAATCTACGCGTACGACGACAAGGAAAAGGAGCAGAAGGGACGGAGGGCATTCGTTCGTTTGGTTTATCAGCTGGGCAATGGGTCGGAGATTCAGTTCACCAGGACTATCACGAGCGCTGGCGTCAGCGAGTACCGGATTGACGGGAGCACCGTAACGTGGGATGTGTATAATGCTAAACTAAAGTCACTTGGCATTCTTGTCAAAGCTCGCAATTTCCTCGTATTTCAGGGTGATGTGGAATCCATTGCATCGAAGAATCCTAAAGAGCTTACTGCCCTTCTCGAGCAGATATCTGGCTCTGATGAGCTCAAAAGAGACTATGAACGATTTGAAGAAGAAAAAGCCACAGCTGAAGAAAAATCAGCCCTTGTTTACCAGAAGAAGAAGACTGTAGTTATGGAGAGAAAGCAGAAGAAGGAGCAAAAGGAAGAAGCAGAGAAGCATATTCGGTTGCAGGATCAGCTGAAAACTATAAAGAAAGAGCATTGCTTGTGGCAATTATTCAATATAGAAAGAGATATTGAAAAGACAACTGATGATCTTGAGGATGAGAAAAGAAGTCGTGAAGGTGTCATGGAAGAACTGGAAAAATTTGAAGCTGAAGCCAGTAAGAAGAAGAAAGAACAGGCAAAATATCTCAAAGAAATTGCACAATGCGAAAAGAGAATTGGTGAGAAAAGCAACAAACTTGACAGGAATCAACCTGATCTTCTGAAGTTGAAAGAGGAGATGGCTCGTATTAACTCAAAAATAAAAAAAGGGAAGAAAGAGCTAGGCAGAAAAAGGGAAGAACGGAGAAAACATGCTAATGATATAACAGAGCTACAGAGGGGTATCCGAGATCTCACTGCCAAATTGGAAGATCTACAGGAAAAGAGTCGAGATGTTGGTGATGAACTAAAGCTAGATGGCTGTGACTTGGAAGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGGGAGGAGAAAGAACTTCTGGATAGGCAACAACATGCAGATAGTGAAGCTCAAAAAAATTTGGATGAAAATCTTCAACAATTAAGGAATAGGGAGTCTGAATTGAATTCGCAAGAAGAACAGATGCGAACTAGGCTGAAAAAAATTCGTGATAATACTTCAAAAAATAAGGATGACCGTGCGAAATTGGAGAAAGAAAGGTCTGTGATGCAGGACAAACATCGAGATTCCAGGAAGAAACATGAAAATTTGAAGTTGAAAATTGGTGAAATAGAAAACCAACTTCGTGAACTGAGGGCTGATCGATATGAAAATGAGAGAGATGCAAAACTGTCTCAAGCTGTGGAGAGCCTCAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTAGGCCAACGCAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCGGTTGTAGTTGAGGATGAAAAGACTGGAAAGGAATGCATTAAGTATTTGAAAGATCAGAGGCTTCCTCCGCAGACATTTATTCCTTTGCAATCAGTTCGTGTGAAGCCAATTATTGAAAGATTGCGCACATTAGGTGGCACAGCAAAGCTGGTTTTTGATGTTATTCAGTTTGATCCCGCCTTGGAGAAGGCAATTCTCTTTGCTGTCGGCAATACTCTTGTTTGTGACGATCTTGAGGAGGCCAAAGTTTTGAGCTGGAGTGGTGAGAGGTTCAAAGTTGTGACTGTGGATGGAATACTGCTGACAAAATCTGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAGGCTAGGTCAAAACAGTGGGATGACAAAAAGATTGAAGGCCTTAAGAAGAAGAAAGAGCAGTATGAATCGGAGTTGGAAGAGGTAGGATCAATGAGAGATATGCACCTTAAGGAGTCTGAAGCATCGGGAAAAATTAGTGGACTTCTAAAGAAACTTCATTATGATGAAATTGAGGAGAAAAGCATTGTAGACAAACTTTCAAATTTGAAGCGAGAGAAAGATACAATCAAAGAAGAAATTGAACGGATAAGTCCAGAACTGCAGAAGTTAAATGGCACTATTGATAAGAGGAATGCGGACATACGTAAGCTGGAGAAGAGGATAAATGAAATTACTGATAGGATTTACAAAGATTTCAGCAAGTCGGTTGGGGTTTCTAACATTCGTGAGTATGAAGAAAATCAACTCAAATCTGCTCAGAATGTAGCAGAGGAGAGGCTAAGCTTGAGCAGCCAGCTATCAAAGTTAAAATATCAGTTGGAGTATGAACAAAATCGGGATATGACTACACGAATTAGAGAACTGGAATCTTCTTTGAGTGCTCTTGAACATGATTTAGAACAGGTACAGCACAAAGAGGCTGAAACAAAGTTAGCAGCTGAGAAAGCTACCGAAGACATTAACCAGCTGAAGGACGAAGTTCAGGAGTGGAAATTGAAGTCAGAAGATTGTGAGAAGGATATCCAAGACTGGAAGAAGCGTGCTTCTTCAGCCACAACAAGCATATCTAAACTTAATCGTCAGATGAACTCAAAGGAGGCCCAGATTGAGCAGTTAATTGTCCAGAAGCAAGAAATTGTAGACAAGTGTGAACTAGAACAGCTTAGCCTGCCAATTATAGAAGATCCAATGGATACTGGTACTTCAATACCAGGCCCAGTTTTTGACTTTGACCAACTAAGTAGAGCTCTGAAGGACAGGAGGAATTCCAACAGAGACAAAATTGAGGCTGAGTTTAGGCAAAAAATGGATTCCCTGACATCTGAAATTGAACGAACAGCACCAAATTTGAAGGCATTAGATCAATATGAGGCTCTGCTGGAAAAGGAAAGAGCTGTAACCGAAGAGTTTGAAGCCGTTAGGAAAGAGGAGAAAGAGAAGGCTGATAGGTTCAATGCAGTTAAGCAGAAGAGGTATGAGCTGTTCATGGATGCTTTCAGCCACATATCCGGTAATATAGATAAAATATACAAACAGCTTACAAAGAGCAACACACATCCGCTGGGTGGAACAGCATACTTAAACTTGGAAAATGAAGATGATCCATTTCTGCATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTTCGTGATATGGAGCAGCTATCTGGCGGGGAGAAGACTGTTGCTGCACTTGCTTTGCTATTCTCCATCCACAGTTACAAGCCTTCACCTTTTTTCATATTGGACGAAGTTGATGCTGCATTGGACAACTTAAATGTTGCGAAGGTTGCTGGATTCATTCGTTCCAAATCTTGTGAGGGAGCAAGGGCTAGTCAAGATGCTGATGGTGGCAATGGCTTTCAAAGCATTGTGATATCCTTGAAAGATAGCTTTTATGACAAAGCTGAAGCATTGGTTGGTGTTTACCGTGACTCAGAGAGAAGCTGTTCGAGAACTCTGACATTTGACCTGACCAAATACCGTGAGTCCTAA 3654 0.4209 MPSLITPGKIHRLEMENFKSYKGLQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDKEKEQKGRRAFVRLVYQLGNGSEIQFTRTITSAGVSEYRIDGSTVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYERFEEEKATAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHIRLQDQLKTIKKEHCLWQLFNIERDIEKTTDDLEDEKRSREGVMEELEKFEAEASKKKKEQAKYLKEIAQCEKRIGEKSNKLDRNQPDLLKLKEEMARINSKIKKGKKELGRKREERRKHANDITELQRGIRDLTAKLEDLQEKSRDVGDELKLDGCDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNLDENLQQLRNRESELNSQEEQMRTRLKKIRDNTSKNKDDRAKLEKERSVMQDKHRDSRKKHENLKLKIGEIENQLRELRADRYENERDAKLSQAVESLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGTAKLVFDVIQFDPALEKAILFAVGNTLVCDDLEEAKVLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKKKKEQYESELEEVGSMRDMHLKESEASGKISGLLKKLHYDEIEEKSIVDKLSNLKREKDTIKEEIERISPELQKLNGTIDKRNADIRKLEKRINEITDRIYKDFSKSVGVSNIREYEENQLKSAQNVAEERLSLSSQLSKLKYQLEYEQNRDMTTRIRELESSLSALEHDLEQVQHKEAETKLAAEKATEDINQLKDEVQEWKLKSEDCEKDIQDWKKRASSATTSISKLNRQMNSKEAQIEQLIVQKQEIVDKCELEQLSLPIIEDPMDTGTSIPGPVFDFDQLSRALKDRRNSNRDKIEAEFRQKMDSLTSEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKADRFNAVKQKRYELFMDAFSHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDADGGNGFQSIVISLKDSFYDKAEALVGVYRDSERSCSRTLTFDLTKYRES 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4798g00022 1217 Coils Coil 342 369 - -
Pral4798g00022 1217 Coils Coil 170 190 - -
Pral4798g00022 1217 SUPERFAMILY Smc hinge domain 481 682 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pral4798g00022 1217 Coils Coil 198 225 - -
Pral4798g00022 1217 CDD ABC_SMC1_euk 1096 1211 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Pral4798g00022 1217 Coils Coil 412 502 - -
Pral4798g00022 1217 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pral4798g00022 1217 Coils Coil 723 743 - -
Pral4798g00022 1217 Gene3D - 8 229 IPR027417 -
Pral4798g00022 1217 Gene3D - 958 1216 IPR027417 -
Pral4798g00022 1217 Coils Coil 237 292 - -
Pral4798g00022 1217 MobiDBLite consensus disorder prediction 423 475 - -
Pral4798g00022 1217 Coils Coil 675 695 - -
Pral4798g00022 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1159 IPR027417 -
Pral4798g00022 1217 Coils Coil 829 933 - -
Pral4798g00022 1217 Coils Coil 751 778 - -
Pral4798g00022 1217 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Pral4798g00022 1217 Coils Coil 1007 1027 - -
Pral4798g00022 1217 Coils Coil 307 327 - -
Pral4798g00022 1217 Pfam RecF/RecN/SMC N terminal domain 10 1199 IPR003395 -
Pral4798g00022 1217 Gene3D - 496 577 - -
Pral4798g00022 1217 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Pral4798g00022 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 326 IPR027417 -
Pral4798g00022 1217 Gene3D - 578 660 - -
Pral4798g00022 1217 PIRSF SMC 8 1213 IPR024704 GO:0005524|GO:0016887
Pral4798g00022 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1217 - -
Pral4798g00022 1217 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4798g00022 Pral-Chr4798 179003 189607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4798g00022 8 112 Structural Maintenance of Chromosomes family AT5G61460 34.821 1.32e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4798g00022 K06636 - gmx:100785315 1919.05