Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4798g00013 ATGGATTTTCTTCTGTTCCAAAACCAAGAGCCATCCCCTGTAAATTCCAATTCCTCTGTTTCCGAAGAATCATTTAGTTGGGAGGACTTCTTCACCTTCAACTCCAGTGACTACTCATCTTCCCAATCCAATTCCGTGGGAGGAATCGAATCTCAGGAAGTATCCTCTCAAGTGCAAGTCACAAATACTAAAGCATGCTCACCACCACCACCACCAAAAGAGCAAAGCAGTGGCAACAGTGGCGGCAAGAGAGAGAAGAGGCCGTACAGAGGAGTGAGGAGGAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCGACGAGAAATGGGGTGAGAGTGTGGATCGGAACGTTTGATACGGCGGAGGCGGCGGCTTTGGCGTACGACCAGGCGGCTTTCTGCACCAAGGGATCAATGGCGGTGCTGAATTTCCCGGAGCAAGTGGTGAGGGAGTCCCTAGAGAGGATGGCGAGTAAGCCATGGGAGGAAGATTCGTCTCCTGTGCTGGCCCTCAAGAGAAAGCATACCTTGAGGCCAAGGTCGTCGTCGTCGTCGTCCTCCTCCGACCCTAAAAGACCCAGAAAGAATAACAGCTCCTCCGGGGACGCCCATGCCTCCAACAACGTGCTCGTCTTGGAGGATCTGGGGGCTGAATATTTGGACCACCTCTTGAGCTTGACCTCTTCTGAGTTTGGTTCCTAG 705 0.5333 MDFLLFQNQEPSPVNSNSSVSEESFSWEDFFTFNSSDYSSSQSNSVGGIESQEVSSQVQVTNTKACSPPPPPKEQSSGNSGGKREKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFCTKGSMAVLNFPEQVVRESLERMASKPWEEDSSPVLALKRKHTLRPRSSSSSSSSDPKRPRKNNSSSGDAHASNNVLVLEDLGAEYLDHLLSLTSSEFGS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4798g00013 234 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Pral4798g00013 234 MobiDBLite consensus disorder prediction 160 207 - -
Pral4798g00013 234 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Pral4798g00013 234 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Pral4798g00013 234 MobiDBLite consensus disorder prediction 37 92 - -
Pral4798g00013 234 MobiDBLite consensus disorder prediction 181 207 - -
Pral4798g00013 234 MobiDBLite consensus disorder prediction 1 21 - -
Pral4798g00013 234 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Pral4798g00013 234 CDD AP2 89 148 IPR001471 GO:0003700|GO:0006355
Pral4798g00013 234 Pfam AP2 domain 89 137 IPR001471 GO:0003700|GO:0006355
Pral4798g00013 234 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Pral4798g00013 234 PANTHER DNA-BINDING DOMAIN 43 226 IPR044808 GO:0003700|GO:0009873
Pral4798g00013 234 MobiDBLite consensus disorder prediction 37 64 - -
Pral4798g00013 234 Gene3D AP2/ERF domain 88 148 IPR036955 GO:0003700|GO:0006355
Pral4798g00013 234 FunFam Ethylene-responsive transcription factor 2 87 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4798g00013 Pral-Chr4798 141290 142195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4798g00013 82 225 AP2-EREBP Transcription Factor Family AT2G31230 57.764 5.43e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4798g00013 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4798g00013 K14516 - gmx:100779524 215.698