Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4798g00012 ATGGAAGAGGGGATGAGGAGTGGGAATAAGAATGGTAATGGAGAGGTGAGATACAGAGGCATACGGAGGAGGCCGTGGGGTAAGTTTGCCGCTGAGATCCGTGACCCGACCCGCAAAGGGACTCGCATTTGGCTCGGAACCTTCGACACCGCCGAGGAGGCTGCCAGGGCTTACGACGCCGCCGCCTTCCATTTCAGGGGTCACCGAGCTATTCTCAATTTCCCCAACGACCATCACTCCCTTCATCCTCCCACTTCTTCACTGCCTCTGCCTCTGCCTTCTTCTTCTTCTTCCTCTTCGTCTTCGAGAATCCCGCCACCCGACGCCGACGGCGCCGTAGAGTTGGAATACTTGGACAACAACTTGCTGGATGAACTCCTCCAACAAGGTCACGGCCATCCTCACTTTCCTCAGTGA 417 0.5635 MEEGMRSGNKNGNGEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEEAARAYDAAAFHFRGHRAILNFPNDHHSLHPPTSSLPLPLPSSSSSSSSSRIPPPDADGAVELEYLDNNLLDELLQQGHGHPHFPQ 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4798g00012 138 PANTHER DNA-BINDING DOMAIN 13 100 IPR044808 GO:0003700|GO:0009873
Pral4798g00012 138 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Pral4798g00012 138 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Pral4798g00012 138 MobiDBLite consensus disorder prediction 91 105 - -
Pral4798g00012 138 FunFam Ethylene-responsive transcription factor 2 16 76 - -
Pral4798g00012 138 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Pral4798g00012 138 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Pral4798g00012 138 MobiDBLite consensus disorder prediction 74 111 - -
Pral4798g00012 138 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Pral4798g00012 138 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Pral4798g00012 138 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Pral4798g00012 138 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4798g00012 Pral-Chr4798 134214 134848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4798g00012 13 127 AP2-EREBP Transcription Factor Family AT3G23230 57.025 2.90e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4798g00012 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4798g00012 - - gmx:100500462 137.117