Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4798g00011 ATGGCTGCCTCGGACTCTGCTTTTCCCGTATTCGCCATCGTTGTGCTCAGCATCATGGCCACGGCTCTGTTGCTCATCGGCTACTTCACTTTCGTCGCCAAGTGCTGCTCTTACTGGCACCACCTCAACCCCCTCACATGGCTTTCCATTCTGCGTCCCAGACACAGCGAAGAACCCTTCATAGCTCTCTCCCCCACCACGTGGAATCGTGGCCTTGATGAATCCATCATTCGAGAAATACCCACGTTCCAGTTCGTCAAAGGTGAGGATCATGGTGGTAGTACTGTGTACGGGTGTGTGGTCTGTTTGAGTGAGTTTCAGCAACAGGACATGCTCAAAGTTCTGCCCAAATGCAGCCATGCTTTTCACTTGGACTGTATCGATATTTGGCTTCAGAGCAACGCAAATTGTCCTCTTTGCAGATCATGCATTTCTGGCACCACGCGTCCTCCATTGGACCATATCATAGCACCGAGCTCTTCTCCTCAAGATTCTCAAATACTCTCCAATATGGGCAGTGATGAAGACTTTGTGGTAATTGAATTGTGGGGAGAAGATGGGGGATCGCTGTCATTGAGGCAACATGAACGAAACCAGTCGAGCGGGGGAAGCCTGGCACAGAGTAGAAGTCACTCCACGAGGAAGATGCAGCAGAAGCTCGGGCACCTGAAATCGAGGAAGTGGCAGCATGTGTCCATCATGGGAGACGAGTGCATTGATACGAGGGAGAAAGATGAACAGTTCTGTATTCAGCCACTTAGGAGATCTTTCTCCATGGATTCTGCAAATGATAGGCAAATTTACTTGGAAGTTCAAGCCATTACACAGCAGCCGAATAGGCATCAAAATGACGCTAGTGGGAGTGAAGACAGTAACGTTCACAGCAGAGGTCGAAGGTCTTTCTTTCCATTTCGTTATGGTCGTGGATCCAAAAACGCAGTACTTCCTCTGGAGAATGAGGTCTGA 966 0.4938 MAASDSAFPVFAIVVLSIMATALLLIGYFTFVAKCCSYWHHLNPLTWLSILRPRHSEEPFIALSPTTWNRGLDESIIREIPTFQFVKGEDHGGSTVYGCVVCLSEFQQQDMLKVLPKCSHAFHLDCIDIWLQSNANCPLCRSCISGTTRPPLDHIIAPSSSPQDSQILSNMGSDEDFVVIELWGEDGGSLSLRQHERNQSSGGSLAQSRSHSTRKMQQKLGHLKSRKWQHVSIMGDECIDTREKDEQFCIQPLRRSFSMDSANDRQIYLEVQAITQQPNRHQNDASGSEDSNVHSRGRRSFFPFRYGRGSKNAVLPLENEV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4798g00011 321 MobiDBLite consensus disorder prediction 194 214 - -
Pral4798g00011 321 MobiDBLite consensus disorder prediction 194 224 - -
Pral4798g00011 321 MobiDBLite consensus disorder prediction 276 296 - -
Pral4798g00011 321 FunFam E3 ubiquitin-protein ligase ATL6 62 146 - -
Pral4798g00011 321 MobiDBLite consensus disorder prediction 276 290 - -
Pral4798g00011 321 PANTHER RING-H2 FINGER PROTEIN ATL16 4 318 IPR044600 GO:0016567|GO:0016740
Pral4798g00011 321 Pfam Ring finger domain 99 141 IPR001841 -
Pral4798g00011 321 SUPERFAMILY RING/U-box 98 145 - -
Pral4798g00011 321 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Pral4798g00011 321 CDD RING-H2_EL5-like 99 141 - -
Pral4798g00011 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 146 IPR013083 -
Pral4798g00011 321 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4798g00011 Pral-Chr4798 130460 132203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4798g00011 2 281 C3H Transcription Factor Family AT1G04360 43.974 1.18e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4798g00011 K19041 - gmx:100809883 439.113