Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4798g00005 ATGCATATAAAGGTTCACTCCCCCTTTTATATTCTCTGCACAGGTAAAAGCTTGATGGAAGGAAACTGTGTGAGAAGAGATCACAAGCATGGAGAGGAAAACCTGAGCCTTGAGGAGCATTCATGGGCAAGCTCATGGCCGGCAAGAAATTACGCGTGTAGCTTCTGCAAGAGAGAGTTCAGGTCAGCTCAAGCTTTAGGTGGCCATATGAACGTGCACAGGAGAGATAGGGCTAGACTGAGATCAGGCATAATACCACCCTTATGGCTTAACTCTGAATCTCTTAAACCTGGCCCTATAACCTCAAGGCCACCTTCTAACCCAACTTCCTTACCTGCTTATGACCTTTTGGATAACGGTTACTCACACCATGCCCCTTCTCTCACTTTGTCTTCTTCGTCCTCCTTTGCTTCTGCGAGTGATGATAAGAAGCCACCAATGCTCGTCACGTCTCCTTCCAAGCTCCCTCTTCTCGGCTCTCAAAGCAGAGAAATGATCGTGAATGGTGACAGCACGAAGAGTGGATTTAGATCAATTAACGACAAAGTGAAGGGCTGTGCAAAGGAGAAAGGGCTTAAAGGTTTCGACAGCATTGAGGAGGATGGCAATACTAATATCACGTTGGAGCTGGGTTTAGGGTTGCTTCAACACCCAAGTGAGCAAATAGATTTGGAGCTTCGACTCGGCCATTTCTAG 696 0.4684 MHIKVHSPFYILCTGKSLMEGNCVRRDHKHGEENLSLEEHSWASSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSGIIPPLWLNSESLKPGPITSRPPSNPTSLPAYDLLDNGYSHHAPSLTLSSSSSFASASDDKKPPMLVTSPSKLPLLGSQSREMIVNGDSTKSGFRSINDKVKGCAKEKGLKGFDSIEEDGNTNITLELGLGLLQHPSEQIDLELRLGHF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4798g00005 231 MobiDBLite consensus disorder prediction 95 115 - -
Pral4798g00005 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Pral4798g00005 231 SMART c2h2final6 51 73 IPR013087 -
Pral4798g00005 231 PANTHER OS07G0101800 PROTEIN 32 230 - -
Pral4798g00005 231 Pfam C2H2-type zinc finger 51 75 - -
Pral4798g00005 231 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Pral4798g00005 231 MobiDBLite consensus disorder prediction 132 155 - -
Pral4798g00005 231 Gene3D Classic Zinc Finger 31 83 - -
Pral4798g00005 231 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4798g00005 Pral-Chr4798 67892 68587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4798g00005 46 231 C2H2 Transcription Factor Family AT2G42410 37.037 7.03e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4798g00005 zf-C2H2_6 6.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4798g00005 - - pcin:129305638 317.775