Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4793g00012 ATGGTTCTGAGTAGCCGAATTTTCTGTGCTCATTTTATTATTATTAATTCCTTGTTGCTGCTTAGTTGTCACATGGTCTTTGGGACTCCGACTGACATCTTCTGCTTGAAAAGTATAAAAGATTCTCTTCAAGACCCATATGGTTATTTGAAGTCTTCCTGGGATTTCAACAACAACACAGAAGGATTTATCTGTAAATTTACTGGGGTCGAATGTTGGCACCCTGATGAGAACAAAGTCTTAAATCTAAAGTTGTCAAACATGGGACTCAAGGGCCAGTTTCCTCGTGCCATTCGAAATTGCTCGAGCTTAACAGGATTGGACCTGTCAATTAACAAACTTTCTGGAACAATCCCATCAGATATCAATGTTCTCCTTGAATATGTGACAAATCTTGATCTATCTTCAAATGACTTTTCTGGGACGATCCCTGTGAATCTTGCAAATTGTTCTTATCTTAATATTCTTAAACTGGATCAAAATCGGCTCAGCGGGACGATTCCTGGACAATTCAGCACGCTTACAAGGCTCAAGACATTTAGTGTCTCAAGCAATCTTTTGACGGGGCCAATTCCAAACCTTAAGCAGCAAGTCTCAGCTGATAGCTATTCAAATAATCCTGGACTATGTGGTCCCCCTTTGCCAGTTTGCCAGGCCCCATCCTCCAAGAGTAACTCTGCAGTTATAGCCGGAGCAGCTGTTGGTGGGGTGACGGTTGGAGCATTAGTAATAGGTATTGGATTGTTCTTCTTTGTCAGACGAGTATCTGTGATTAAGAAGGAAGAAGACCCTGAAGGCAACAAATGGGCAAGAAGTCTGAAGGGAACTAAAGGAATAAAGGTTTCAATGTTTGAGAAGTCAGTTTCAAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAACTTCAGCAACGTCAATATTATCGGGTCTGGAAGAACAGGAACCATGTACAAAGCTGTCCTTGATGATGGCACATCGCTCATGGTTAAGAGATTGCAGGAATCTCAACACTCCGAGAAAGAATTTCTTTCTGAGATGTCTACCCTTGGGGCTGTCAGACATCGTAACTTGGTTCCTCTTTTAGGTTTTTGCCTTGCCAAGAAGGAGAGGCTTTTGGTCTATAGTTTTATGTCAAAAGGCACTCTTCATGATCAGCTACATCCTGCTGAAGGTCAGAGCACCCTAGAATGGCCTATAAGGCTTAAAATTGCTATTGGAGCAGCTAAAGGATTAGCATGGCTCCATCATAGCTGCAATCCCCGTATCCTTCATCGTAACATAAGCTCCAAGAGTATCTTATTGGATAGCGATTTTGAGCCCAAAATTTCTAGTTTTGGCCTTGCTAGACTGATGAACCCAATTGATACACATCTGAGTACTTTTGTTAATGGGGAGTTTGGGGATTTAGGTTATGTTGCTCCTGAGTATACAAGAACGCTGGTGGCTACAACTAAGGGGGATGTTTATAGCTTTGGGGTTGTTCTTCTTGAGTTGGTGACAGGTGAAAGACCCACTCATATGGCTAAAGCTCCAGAAACATTCAAGGGAAGTTTGGTTGAATGGATTACCGAACTCTCAAGCAGCTCTGAACTGCAAACTGCCATTGATGAATCATTAGTTGGGAACGGATGTGATCATGAGCTTTTCCAATTTCTTAAGGTTGCATGCAACTGTGTTTCATTAAATCCAAAGGAAAGGCCGACTTTGTTTGAAGTATACCAGTTTCTGAGAGCCATTGGTAGCAGGTACAATTTCACAACTGAGGATGAGATATTGGTACCTACAGATATTGGTGATGCTGGAAATCTAGACGAACTTATTGTGGCTCGAGAAGAGAATAATTGA 1848 0.4161 MVLSSRIFCAHFIIINSLLLLSCHMVFGTPTDIFCLKSIKDSLQDPYGYLKSSWDFNNNTEGFICKFTGVECWHPDENKVLNLKLSNMGLKGQFPRAIRNCSSLTGLDLSINKLSGTIPSDINVLLEYVTNLDLSSNDFSGTIPVNLANCSYLNILKLDQNRLSGTIPGQFSTLTRLKTFSVSSNLLTGPIPNLKQQVSADSYSNNPGLCGPPLPVCQAPSSKSNSAVIAGAAVGGVTVGALVIGIGLFFFVRRVSVIKKEEDPEGNKWARSLKGTKGIKVSMFEKSVSKMKLSDLMKATNNFSNVNIIGSGRTGTMYKAVLDDGTSLMVKRLQESQHSEKEFLSEMSTLGAVRHRNLVPLLGFCLAKKERLLVYSFMSKGTLHDQLHPAEGQSTLEWPIRLKIAIGAAKGLAWLHHSCNPRILHRNISSKSILLDSDFEPKISSFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATTKGDVYSFGVVLLELVTGERPTHMAKAPETFKGSLVEWITELSSSSELQTAIDESLVGNGCDHELFQFLKVACNCVSLNPKERPTLFEVYQFLRAIGSRYNFTTEDEILVPTDIGDAGNLDELIVAREENN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4793g00012 615 Gene3D Phosphorylase Kinase; domain 1 264 377 - -
Pral4793g00012 615 SUPERFAMILY L domain-like 30 213 - -
Pral4793g00012 615 CDD TM_EGFR-like 229 260 - -
Pral4793g00012 615 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 264 377 - -
Pral4793g00012 615 Gene3D Ribonuclease Inhibitor 32 218 IPR032675 -
Pral4793g00012 615 FunFam Nuclear pore complex protein NUP107 30 193 - -
Pral4793g00012 615 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Pral4793g00012 615 Gene3D Transferase(Phosphotransferase) domain 1 378 594 - -
Pral4793g00012 615 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 378 591 - -
Pral4793g00012 615 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 80 579 - -
Pral4793g00012 615 CDD STKc_IRAK 309 577 - -
Pral4793g00012 615 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
Pral4793g00012 615 Pfam Protein tyrosine and serine/threonine kinase 307 576 IPR001245 GO:0004672|GO:0006468
Pral4793g00012 615 ProSiteProfiles Protein kinase domain profile. 303 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4793g00012 615 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4793g00012 Pral-Chr4793 169264 172559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4793g00012 32 591 Receptor kinase-like Gene Family AT3G28450 48.063 2.31e-177 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Pral4793g00012 PK_Tyr_Ser-Thr 4.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4793g00012 - - gmx:100817267 910.212