Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4792g00054 ATGGCTTCTTCTTCTTCTTCTAGTTCTTCCTGGACTTACGACTTGTTCTTGAGTTTTAGAGGCGAAGACACTCGTGCCGGTTTTACTTCTGAGCTTTATAGCGCTCTAGGGCGGTCAGGGATCCATGCTTTCATGGACGATGAAGGAGTTGAGAGGGGAGAAGAGATCTCTGCCTCACTATTGCAAGCAATTGAACGATCACGAATTGCGTTGGTAATTTTGTCTCCAGATTATGCATCTTCCAGATGGTGTCTGGATGAACTGACAGGTACATATGGTGAAGCGATGAAACGACACGAGCTAAGGTTGGGAGGGGGCGGTGGTTGCCGGGTACTGCGGTGGAGGCAGGCTCTCACGGAAATCAGCAACCTTTCCGGGTTTGATTCCGGAACATTTCGGTCTGAAGTTGAGCTGCTTGATACCATTGTGAAGGATGTTTTAGAGAAAGTAGATGCTGGACAATTGTTTGTTGCTGAGCGTCCAGTAGGAATAGAGTCTCAAGTTCGGAAACTGACAAGTAAATTGTCAAAAAAGACATTAACAAAGGCTCTTATCATTGGCCTCTGGGGGATGGGAGGCGTTGGCAAAACTACTGTTGCCAAAGCCTTTTACAATACAATTGGTCGTACATTTAGAAGAGCAAGAAGTTTTCTTGCGCAGATAAGAGAAAACTCAAAGCATTCTAATGACCTAGTTAATTTGCAAGAGCAACTCATTTCTGATATCATTAATACAGAAGTTTTCAAGATACCTAACATTGATAGAGGGATAAAGATACTTCAAGAAAGACTTCCCCACATAAAAGCATTTATTGTATTGGATGATGTGGATAGTGTCAATCAGCTAAACGCTTTATGTGGAAGTCTTGAATGGTTTTGTCCTGGGAGTATAATAGTCATAACAACTAGAGATCTGCATCTGCTTAGTGTCATTAGAGCTGATCACAAGTATAAAATGGAAACAATGAATGAAATTGAGTCACTCGAGCTTTTCAGTTGGCATGCCTTTAAACAAAAAGCCCCCCTTGAAAACTTCATAGAACTTTCTAAAAATGTAGTTGCTTATTGCGGAGGACTTCCTCTAGCTCTTGAAGTCCTTGGGTCTTATTTGTTTGATAGAGAAATTGAAGAATGGGAGGATGTGCTGTCCAAACTAGAAAGGATTCCAAATGATGAGATACAAGCAAAGTTAAAAATAAGTTTTGATGGATTAAAGGATGATATGGAGAAGAATATATTTCTTGACATATGTTGCTTCTTTATCAATAAGGATAGAAACTATGCGACGCATATATTAAATGGATGTGGATTTAACGCAAAAATCGGAATAACAACCCTCATTGAGCGATGCCTAGTAAATTTTAATAGGAAGAATAACAAGCTTGAAATGCATGACTTATTACGTGATATGGGAAGAGAAATCATTTGTGGAAGCCCACGAAAGGACCTCGAGGATCGCAGTAGATTGTGGTTTCAGGAGGATGTAACTGAAGTGTTAATGCAAAACACGGGAACAAAAGTTATTGAGGGCATATCCTTAAAGAAGCCCCATGAAGTATGTGAGATTGATGCTAAGGCATTCAAGGCAATGAGAAAACTCAGATTGCTCCAATTAGAGTATGTAAATCTTGAAGGAGATTATAGGCATCTTTCCAATAAGCTAAGGTGGCTTTGTTGGCCTGGATTTCCTTTAAAATCTATACCTGACAGCTTGTATCAGAAAAACTTAGTTGCTATTGACTTTAAATACAGCAACCTCAGGCTAGTTTGGAAGAAGCCCCAATTGTTGCAGTGTTTGACAATCCTCATTCTCAGTCACTCACCTTATTTGAGACAAACTCCTGATTTTACAAACCTGCCAAATCTTGAAAAGCTAGTACTGAAAGATTGTCCGAGCTTGAAGATAGTTCACCAAAGCATTGGAGATCTAAAAAAAATCATTTTGGTAAATCTAGAAGACTGCAAGTGCCTAAGGGTTCTTCCTAGAAGCATCTACAAGTTGAAATCAGTAAAAACTCTCATTCTTTCTGGTTGTTCGTTGCTTGACCATTTGGAAGAAGATATTGAGCAGATGGAATCCATGACGGTACTAGAGGCAGATAATACTGCCATAACAGTAGTACCCAAGTCATTAGTAAGATTGGAAGCGCTTAAGCATGGATATGTATCTTTCCCAGGCCTTAAAGGAAGAGCACAAGATGTATTTCCTTCTCTCATATGGCTATCTTGCCAAGCTTCGAGGTATGTGGGAGGAATGCCGATCACAGTCTCGATCCAATGGAGAAATGACGAGACTTTTGGATGCCCTGTATGGGACAAACTTCGTGGAATTGGAATCCACGCCAAGCACATCACAGTTCTCATACGTGGGAGCTTCTGCATCATCTGTCGGTCGTGA 2397 0.4051 MASSSSSSSSWTYDLFLSFRGEDTRAGFTSELYSALGRSGIHAFMDDEGVERGEEISASLLQAIERSRIALVILSPDYASSRWCLDELTGTYGEAMKRHELRLGGGGGCRVLRWRQALTEISNLSGFDSGTFRSEVELLDTIVKDVLEKVDAGQLFVAERPVGIESQVRKLTSKLSKKTLTKALIIGLWGMGGVGKTTVAKAFYNTIGRTFRRARSFLAQIRENSKHSNDLVNLQEQLISDIINTEVFKIPNIDRGIKILQERLPHIKAFIVLDDVDSVNQLNALCGSLEWFCPGSIIVITTRDLHLLSVIRADHKYKMETMNEIESLELFSWHAFKQKAPLENFIELSKNVVAYCGGLPLALEVLGSYLFDREIEEWEDVLSKLERIPNDEIQAKLKISFDGLKDDMEKNIFLDICCFFINKDRNYATHILNGCGFNAKIGITTLIERCLVNFNRKNNKLEMHDLLRDMGREIICGSPRKDLEDRSRLWFQEDVTEVLMQNTGTKVIEGISLKKPHEVCEIDAKAFKAMRKLRLLQLEYVNLEGDYRHLSNKLRWLCWPGFPLKSIPDSLYQKNLVAIDFKYSNLRLVWKKPQLLQCLTILILSHSPYLRQTPDFTNLPNLEKLVLKDCPSLKIVHQSIGDLKKIILVNLEDCKCLRVLPRSIYKLKSVKTLILSGCSLLDHLEEDIEQMESMTVLEADNTAITVVPKSLVRLEALKHGYVSFPGLKGRAQDVFPSLIWLSCQASRYVGGMPITVSIQWRNDETFGCPVWDKLRGIGIHAKHITVLIRGSFCIICRS 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4792g00054 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 416 IPR027417 -
Pral4792g00054 798 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 719 IPR044974 GO:0006952
Pral4792g00054 798 SMART till_3 12 124 IPR000157 GO:0007165
Pral4792g00054 798 Pfam TIR domain 13 88 IPR000157 GO:0007165
Pral4792g00054 798 Pfam NB-ARC domain 165 391 IPR002182 GO:0043531
Pral4792g00054 798 Coils Coil 533 553 - -
Pral4792g00054 798 ProSiteProfiles TIR domain profile. 11 150 IPR000157 GO:0007165
Pral4792g00054 798 Gene3D - 321 405 IPR042197 -
Pral4792g00054 798 PRINTS Disease resistance protein signature 263 277 - -
Pral4792g00054 798 PRINTS Disease resistance protein signature 185 200 - -
Pral4792g00054 798 PRINTS Disease resistance protein signature 665 681 - -
Pral4792g00054 798 PRINTS Disease resistance protein signature 356 370 - -
Pral4792g00054 798 SUPERFAMILY L domain-like 456 753 - -
Pral4792g00054 798 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 126 IPR035897 -
Pral4792g00054 798 Gene3D - 150 317 IPR027417 -
Pral4792g00054 798 Gene3D - 89 149 IPR035897 -
Pral4792g00054 798 Gene3D - 5 88 IPR035897 -
Pral4792g00054 798 Gene3D Ribonuclease Inhibitor 501 755 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4792g00054 Pral-Chr4792 462344 466217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4792g00054 8 717 WRKY Transcription Factor Family AT4G12020 28.993 5.47e-69 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4792g00054 - - pcin:129287706 973.385