Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4792g00052 ATGGCTTCTTCTTCTTCTAGTTCTTCCTGGACTTACGACTTGTTCTTGAGTTTTAGAGGCGAAGACACTCGTGACGGTTTTACTTCTGAGCTTTATAGCGCTCTAGGGCGGTCAGGGATCCATGCTTTCATGGCCTATGAAAACGTTGAGAGGGGAGAAGAGATCTCTGCCTCACTATTGCAAGCAATTGAACGATCACGAATTGCGTTGGTAATTTTGTCTCCAGATTATGCATCTTCCAGATGGTGTCTGGATGAACTGGTGAACATAATGGAGTGTCGAAGATCTGCAGCTCAGGTGGTTATTCCCATATTCTATAACACAGATCCGTCTCATGTTCGTAAACAGATAGGTACATATGGTGAAGCGATGAAACGACACGAGCTAAGGTTGGGAGGGGGCGGTGATCGCTGGGTGTTGCGGTGGAGGCAGGCACTCACGGAAATCAGGAACCTTTCCGGGTTTGATTCCAGACAATTTCATGCTGAAAGTGAGCTGGTTGAGAAAATTGTTGAGCAAGTTTCAAGAGAATTACCGTCTACTGCTGACCATCCAATGAGAATACAATCACTAGTTCATAAACCAAAAGTTGATAAATGGTTGAATTATGACGTCTTCTTGAGTTTCAGAGGCGAGGACACTCGTCGCGGTTTCACTTCTCATCTTTATAAAGCTCTAAGGCAGTCAGGAATCCATGCTTTCATGGACGATACAAGGCTTGAAAGGGGAGAAGAGATCTCCGTCTCCTTATTGCAAGCAATTGAAAGGTCCCGAATTGCGCTGGTAATTTTGTCTCCAGATTATGCATCTTCTAGATGGTGTCTGGATGAACTGGTGAACATAGTAGAGTGTCGAAGATCTGCAGCTCAGGTGGTTATTCCCATATTCTATAACACAGATCCGTCTCATGTTCGTAAACAGACAGGTACATATGGTGAAGCGATGAAACGACACGAGCTAAGGTTGGGAGGGGGCGGTGATCGCCGGGTGTTGCGGTGGAGGCAGGCACTCACAGAAATCAGCAACCTTTCCGGCTTTGCTTCATCACTACATCGGAATGAAAGTGATATGATTCAAACTATTATTGCGTCTGTTTCAAAAAGAGTAGACACTGGACAATTGGTTGTAGCTGAGCATCCAGTGGGAATAGAGTCTCAAGTTGATGAATTGACAATTGAATGGTCAAATAAAGAAATCCAAAAACCTCTTATCATAGGCCTCTGGGGAATGGGAGGCATTGGCAAAACAACTGTTGCCAAAGCTATCTACAATACAATTGGCCGTCAGTTTAGAAGAGCAAGAAGTTTTCTTCTAAATATGAGAGAAACTTCAAAGCATGTTAATGGCCAAGTCAATTTGCAAAAGCAACTCATTTTTGATATACTTAAAGAAAAAGTTTCCAAGATACCTAACATTGATAGAGGCAAAAAAATAATTGAAGAAAGATTTCCCAACATAAAATCATTTATTGTATTGGATGATTTGGATAGTGTCAATCAACTGAGCACATTTTGTGGTAGTCTTGAATGGTTTTGTCCTGGAAGTATAGTGGTCATAACAACTAGAAATAGCCATTTACTTGATGCCATTAATGCTGACCATAAATATGAAATAGAAAAAATGAATCGAAGGGAGTCTCTTATGCTTTTTAGTTGGCATGCCTTTAAGCAAGCAGATCCCAATGAAGACTTCAAAGAATTGTCTAAAATGGTAGTTGCATATTGTGATGGACTTCCACTGGCTCTTGAAATCCTTGGCTCCTATTTGCGTGGGAGAACAATAAAACAATGGGAGGATGTGTTGTCCAAATTACAGAGGATTCTTACTAAAAGTATACACGAAAAGTTAAAAATAAGCTATGATGGATTGGATGATGATACAGAGAAGGATATTTTCCTTGACATATGTTGCTTCTTTATCAACAAGGACAGGAACTATGTTACACAGATATTAGATGGTTGTGAACTTCATGCAGAAAATGGATTACAAATCCTCATAGAGCGGAGCCTGGTGAAAGTAGGTAGAAATAATAAGCTTGAAATGCATGATTTATTGCAAAAAATGGGAAAGGAAATCATCTGTGGAAGCCCACCTAAAGATCCTCAGAAACGTAGCAGACTATGGTCTCAAGAAGATGTGCTTGATGGAACCAAAGCTGTTGAGGGTATATCTCTAAAGGTACCAAAAAAGCATAGAGATCCCATCGATTCTAAGGCATTTAAGAAGATGAAGAAACTCAGATTACTCCAACTAGACTATGTGAATCTTAAAGGAGATTATAAACATCTTTCCAAAAAGCTGAGGTGGGTTCGTTGGCATGGATTTCCATCAAAATACACTCCAAACAACTTTTACCAAGAAAAACTAGTTGCTATTGACTTCAAATATAGCAAGCTCAAAGTAGTTTGGAAAGAGTCCAAGAAGTTGCCAATGTTGAAGACACTCAATCTCAGTCATTCAACTTCCTTGAGACAAACTCCTGATTACATATCTACCAAACCTTGA 2505 0.4028 MASSSSSSSWTYDLFLSFRGEDTRDGFTSELYSALGRSGIHAFMAYENVERGEEISASLLQAIERSRIALVILSPDYASSRWCLDELVNIMECRRSAAQVVIPIFYNTDPSHVRKQIGTYGEAMKRHELRLGGGGDRWVLRWRQALTEIRNLSGFDSRQFHAESELVEKIVEQVSRELPSTADHPMRIQSLVHKPKVDKWLNYDVFLSFRGEDTRRGFTSHLYKALRQSGIHAFMDDTRLERGEEISVSLLQAIERSRIALVILSPDYASSRWCLDELVNIVECRRSAAQVVIPIFYNTDPSHVRKQTGTYGEAMKRHELRLGGGGDRRVLRWRQALTEISNLSGFASSLHRNESDMIQTIIASVSKRVDTGQLVVAEHPVGIESQVDELTIEWSNKEIQKPLIIGLWGMGGIGKTTVAKAIYNTIGRQFRRARSFLLNMRETSKHVNGQVNLQKQLIFDILKEKVSKIPNIDRGKKIIEERFPNIKSFIVLDDLDSVNQLSTFCGSLEWFCPGSIVVITTRNSHLLDAINADHKYEIEKMNRRESLMLFSWHAFKQADPNEDFKELSKMVVAYCDGLPLALEILGSYLRGRTIKQWEDVLSKLQRILTKSIHEKLKISYDGLDDDTEKDIFLDICCFFINKDRNYVTQILDGCELHAENGLQILIERSLVKVGRNNKLEMHDLLQKMGKEIICGSPPKDPQKRSRLWSQEDVLDGTKAVEGISLKVPKKHRDPIDSKAFKKMKKLRLLQLDYVNLKGDYKHLSKKLRWVRWHGFPSKYTPNNFYQEKLVAIDFKYSKLKVVWKESKKLPMLKTLNLSHSTSLRQTPDYISTKP 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4792g00052 834 Gene3D - 540 624 IPR042197 -
Pral4792g00052 834 PRINTS Disease resistance protein signature 404 419 - -
Pral4792g00052 834 PRINTS Disease resistance protein signature 575 589 - -
Pral4792g00052 834 PRINTS Disease resistance protein signature 807 823 - -
Pral4792g00052 834 PRINTS Disease resistance protein signature 482 496 - -
Pral4792g00052 834 Pfam TIR domain 12 184 IPR000157 GO:0007165
Pral4792g00052 834 Pfam TIR domain 202 367 IPR000157 GO:0007165
Pral4792g00052 834 SUPERFAMILY "Winged helix" DNA-binding domain 612 714 IPR036390 -
Pral4792g00052 834 Gene3D - 197 367 IPR035897 -
Pral4792g00052 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 635 IPR027417 -
Pral4792g00052 834 SUPERFAMILY Toll/Interleukin receptor TIR domain 201 346 IPR035897 -
Pral4792g00052 834 ProSiteProfiles TIR domain profile. 201 369 IPR000157 GO:0007165
Pral4792g00052 834 FunFam Disease resistance protein (TIR-NBS-LRR class) 542 624 - -
Pral4792g00052 834 Gene3D - 368 537 IPR027417 -
Pral4792g00052 834 Gene3D - 5 183 IPR035897 -
Pral4792g00052 834 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 203 829 IPR044974 GO:0006952
Pral4792g00052 834 FunFam Disease resistance protein (TIR-NBS-LRR class) 199 371 - -
Pral4792g00052 834 SMART till_3 202 343 IPR000157 GO:0007165
Pral4792g00052 834 SMART till_3 11 152 IPR000157 GO:0007165
Pral4792g00052 834 Gene3D Ribonuclease Inhibitor 717 831 IPR032675 -
Pral4792g00052 834 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 180 - -
Pral4792g00052 834 Pfam NB-ARC domain 385 617 IPR002182 GO:0043531
Pral4792g00052 834 SMART AAA_5 401 542 IPR003593 GO:0016887
Pral4792g00052 834 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Pral4792g00052 834 SUPERFAMILY L domain-like 732 831 - -
Pral4792g00052 834 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 155 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4792g00052 Pral-Chr4792 442691 446578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4792g00052 195 827 WRKY Transcription Factor Family AT4G12020 27.744 5.77e-64 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4792g00052 - - pcin:129287706 770