Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral478g00001 ATGGGGGATTTCTGGAGCGTCTTTTGTGGTGAATCTGGTTGTTCAGAACCAGGGGAAAGCCCTTGTAGTTATGGTTTCGAGTTCTTGAGAGATCCTTCGTCTTGCATCAATCATTCGTTGATTATTTGCCTCGATGTGTTGCTGCTGATTATGCTTATAATCACTGCAATAAAGAGGTCATCCCCGCAGACAGTTCACCACCATGCCCAGGTACAGAGGTTTTCGAAGTTGCAGGTGGCTTCTGCAATAGTGAATGGTTGTCTTGGGTTAGTTCATTTGTTCTTGGGCGTTTGGGTCTTAGAGGAGAAATTGAGGAAAACTCACACTGCCTTTCCTATCCATTTGTGGTTTCTAGAGTTTTCGCAGGGGTTTACATGGTTGTTGGTGGGTTTAACAACAAGTCTTAGGTTGAAAGACCTTTCAAAACCATGGTTGAAGCTATTGTCTATTCTTTTCTTCTTAGTTTCTGGTGTTTTCTGTGTCATTTCCATTTTGTATGCCAGTAGTGGCCGAGAAGTGTCACTTAAGGTAGCTTTAGATATTGTATCTTTTCCAGGAGCAATATTGTTGCTCGTGTGCTCTTATAAGCGGTCTACGTATGCAGACACTGATGGAAAAATTGATGAAAGTCTTTATGCTCCTTTAAACGGCCACCATTCCACTGATGCTGGCAAAACTAGTTCTTTCAACGATGTAACTCCATTTGCCACAGCTGGATTCTTCAGCAAAATGACGTTTTGGTGGTTGAATCCATTGATGAAAAGGGGTAAGGAGAAAACACTCGAGGATGAAGACGTCCCAAAGTTGCGGGAGGAAGATCAAGCCCAAAGTTGCTATTTGATGTTTTTGGATCAATTGAACCGACAGAAACAAAGGGAACCATCGTCGCAGCCATCACTTTTGTGGACAATCTTGTTGTGCCATTGGAAAGATATATTGTTCTCTGGGTTTTATGCATTGCTGAAGGTGCTCACTATCTCTGCTGGTCCAGTGCTTCTGAATTCTTTCATACTGGTTGCTGAGGGTAAAGGGAGTTACCAATATGAAGGGTATGTATTGGCCATATTACTTTTCCTGACCAAGATCATAGAGTCAGTATCACAAAGGCAGTGGTATTTCCTAAGCAGGCTCACTGGTTTAAAAGTTAGATCATTTCTTACTGCAGCGATTTATAAAAAGCAATTGAGGATATCTAATGCTTCGAAGTTGGTGCATTCAAGTGGGGAGATTATGAATTATGTGACGGTAGATGCTTATAGAATTGGAGAATTCCCGTTTTGGTTTCACCAGATTTGGACTACAAGTCTTCAACTGTGCATTGCATTAATAGTTCTTTTCCGTGCTGTGGGGCTTGCAACATTTGCTGCCTTGGCAGTAATAGTCCTCACTGTGCTTTGCAATACTCCACTTGCAAAGTTACAGCATAAGTATCAGACCAAACTTATGGTGGCACAGGATGAAAGATTGAAGGCTAGTTCTGAGGCTTTAGTGAATATGAAAGTACTGAAACTATATGCGTGGGAAACCCATTTCAAGAGGGCAATAGAATGTTTGAGGAAAGTGGAGTTGAAATGTTTGTCTGCATTACAGTTGAGAAAGGCATACATCACCTTTCTCTTTTGGTCTTCACCTGTTATGGTATCTGCTGCTTCATTTGGGGCATGCTACTTCCTCAAAATCCCGTTACATGCAAATAATGTTTTCACCTTTGTGGCCAGTTTACGCCTTGTTCAGGATCCAATCAGGACCATGGCTGATGTTATTGGGATGCTTATTCAAGCAAAAGTAGCATATACTCGGATTGTGAAATTCCTTGAGGCACCAGAGCTACTGAATGCAAACGTCAAAAAGAGGAACTTAGGTGACAGGCTCAAGGGCTCCATCCTAATCAACTCAGCTGACTTTTCTTGGGAGGATAATGCTTCAAAGCCCACTCTAAGAAACATAAATCTAGTGGTTAAACCAGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGAAAATCAACCCTATTAGCTGCAATTCTTGGTGAAGTTCCTAATACTCGTGGAACTATAGAAGTTCACGGAAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAGACAGGCACAGTAAGGGAGAATATTTTGTTTGGTTCAACTATGGATTCTCAGAGGTATCAAGAAACACTTGAAAGATCATCCTTAGTGAAGGATCTAGAGTTATTTCCCCATGGCGATTTCACTGAAATAGGGGAGAGAGGAGTAAACTTGAGTGGAGGTCAGAAGCAGCGAATTCAGCTTGCTCGTGCTCTTTATCAGAATGCTGATATATATGTCTTGGATGATCCATTCAGTGCTGTTGATGCGCACACTGCCACAAATTTGTTTAATGAATATGTCATGGATGCACTTCAGGGAAAGACAGTCTTACTTGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTATTTTGCTCATGTCTGATGGAGAAATTAGACAAGCTGCCTCATATGACTATCTACTGGCTTCAAGCCAGGAATTTCAGGATCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTGAAAGGCTTGTGAATGTGACGTCTGCTCAGGCAGGACCAAGTTCTGCTAAGGAGATTATTAAATCATATGTGGAGAAGGAATTTAAGGCTTCAAATGGTGATCAGTTAATTAAACAAGAAGAAAGAGAAACAGGAGACAATGGGCTAAAGCCTTACTTTCAATATCTGAATCAGAGGAGGGGTTATTTATACTTCTCCTTGGCTGCCCTTTCCCACCTTACGTTTGTGATTGGTCAGGTATTACAGAACTCATGGATGGCTGCTAATGTTGACAATCCTCATGTGAGCACGTTGCGATTGATTTCAGTATACTTGTTGATTGGAGTTGGTTCAACAATTTTCTTGCTGTTCAGAGTTCTTGGAGTAGTTGCTATGGGTCTTCAATCATCAACGTCTTTGTTTGCTCAGCTACTAAACTCCCTTTTTCGTGCCCCTATATCTTTTTATGACTCCACGCCATTGGGAAGGATCCTTAGTAGGGTCTCATCTGATCTGAGCATTGTTGATCTTGATGTCCCTTTCACTCTTATGTTCGCTGTTGGAGCCACTACAAATTTATATGCTAATCTTACAGTTCTGGCAGTTGTTACTTGGCAAGTCTTGTTTATCTCTATACCGATGGTTTATGTTGCACTTCTGTTGAAGAAATACTACTTTGCCTCTGCGAAACAGTTGATGAGGCTGAACGGCACAACAAAATCCTTTGTAGCCAATCATCTAGCAGAGTCTGTTGCTGGAGCTATGACAATAAGGGCTTTTGAGGAGGAAGAACGTTTCTTTGCCAGGAATCTTGAGTTAATCGATGTCAATGCTTCTCCTTTCTTCCATAATTTTGTGGCAAGTGAGTGGTTGATTCAACGTTTAGAAACAATCAGTGCAGTTGTTCTTGCCTCTGCAGCACTATGCATGGTAGTGCTTCCACCTGGGACTTTTACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTAAATGTATCCCTTGTATTCTCTATTCAAAGAGAGTGCATAATAGCAAACTATATAATATCAGTAGAGAGGCTGAAACAATACATGCATATACCAAGTGAGGCTCCGGAAGTAATAGAAGGAAATCGCCCTCCTTTAAATTGGCCTGCAGTAGGCAAAGTAGAAATAGATAATTTGCAGATAAGATATAGGCCCGATACACCTCTTGTACTTCGAGGGATCACATGTACAATTGAAGGAGGGCACAAGATTGGCATTGTTGGCAGGACAGGCAGTGGAAAGTCTACCCTTATAGGTGCTTTGTTCCGCCTTGTGGAGCCGGCAGGTGGAAACATTATTGTTGATGGCATAGATATTTGTGCCATTGGACTCCATGATTTGAGGTCACGTTTTGGTATCATACCACAAGATCCCACTCTTTTTAATGGCACAGTTAGATATAACATGGACCCCTTGTCTCAACACTCTGACAAAGAGATATGGGAGGTTCTTGGAAAGTGTCAGTTGCGAGAGGCTGTTCAAGAGAAAGAAGGCGGTTTGGACTCCTCAGTTGTGGGAGATGGGTCAAACTGGAGCATGGGGCAACGACAGCTTTTCTGTTTGGGGCGTGCTCTTTTGAGGAGAAGTCGGATTTTGGTGCTCGATGAAGCAACTGCATCTATTGATAATGCTACTGATTTGATTCTGCAGAAAACTATAAGGAGTGAATTTGCTGATTGTACTGTGATGACAGTAGCACACAGGATACCAACTGTGATGGATTGCACCAAGGTTATCTCCATTAGTGATGGAAAATTGGTGGAGTATGATGAGCCAACAAACTTGATGAAGAGAGAAGACTCTCTGTTTGGACAGCTTGTGAAGGAATATTGGTCTCATCTTCCGTCTGCAGAATCACATTAA 4452 0.4198 MGDFWSVFCGESGCSEPGESPCSYGFEFLRDPSSCINHSLIICLDVLLLIMLIITAIKRSSPQTVHHHAQVQRFSKLQVASAIVNGCLGLVHLFLGVWVLEEKLRKTHTAFPIHLWFLEFSQGFTWLLVGLTTSLRLKDLSKPWLKLLSILFFLVSGVFCVISILYASSGREVSLKVALDIVSFPGAILLLVCSYKRSTYADTDGKIDESLYAPLNGHHSTDAGKTSSFNDVTPFATAGFFSKMTFWWLNPLMKRGKEKTLEDEDVPKLREEDQAQSCYLMFLDQLNRQKQREPSSQPSLLWTILLCHWKDILFSGFYALLKVLTISAGPVLLNSFILVAEGKGSYQYEGYVLAILLFLTKIIESVSQRQWYFLSRLTGLKVRSFLTAAIYKKQLRISNASKLVHSSGEIMNYVTVDAYRIGEFPFWFHQIWTTSLQLCIALIVLFRAVGLATFAALAVIVLTVLCNTPLAKLQHKYQTKLMVAQDERLKASSEALVNMKVLKLYAWETHFKRAIECLRKVELKCLSALQLRKAYITFLFWSSPVMVSAASFGACYFLKIPLHANNVFTFVASLRLVQDPIRTMADVIGMLIQAKVAYTRIVKFLEAPELLNANVKKRNLGDRLKGSILINSADFSWEDNASKPTLRNINLVVKPGQKVAICGEVGSGKSTLLAAILGEVPNTRGTIEVHGKFAYVSQTAWIQTGTVRENILFGSTMDSQRYQETLERSSLVKDLELFPHGDFTEIGERGVNLSGGQKQRIQLARALYQNADIYVLDDPFSAVDAHTATNLFNEYVMDALQGKTVLLVTHQVDFLPAFDSILLMSDGEIRQAASYDYLLASSQEFQDLVNAHKETAGSERLVNVTSAQAGPSSAKEIIKSYVEKEFKASNGDQLIKQEERETGDNGLKPYFQYLNQRRGYLYFSLAALSHLTFVIGQVLQNSWMAANVDNPHVSTLRLISVYLLIGVGSTIFLLFRVLGVVAMGLQSSTSLFAQLLNSLFRAPISFYDSTPLGRILSRVSSDLSIVDLDVPFTLMFAVGATTNLYANLTVLAVVTWQVLFISIPMVYVALLLKKYYFASAKQLMRLNGTTKSFVANHLAESVAGAMTIRAFEEEERFFARNLELIDVNASPFFHNFVASEWLIQRLETISAVVLASAALCMVVLPPGTFTSGFIGMALSYGLSLNVSLVFSIQRECIIANYIISVERLKQYMHIPSEAPEVIEGNRPPLNWPAVGKVEIDNLQIRYRPDTPLVLRGITCTIEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGNIIVDGIDICAIGLHDLRSRFGIIPQDPTLFNGTVRYNMDPLSQHSDKEIWEVLGKCQLREAVQEKEGGLDSSVVGDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRSEFADCTVMTVAHRIPTVMDCTKVISISDGKLVEYDEPTNLMKREDSLFGQLVKEYWSHLPSAESH 1483
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral478g00001 1483 Gene3D - 1221 1472 IPR027417 -
Pral478g00001 1483 FunFam ABC transporter C family member 3 1220 1472 - -
Pral478g00001 1483 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
Pral478g00001 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Pral478g00001 1483 FunFam ABC transporter C family member 10 296 609 - -
Pral478g00001 1483 Pfam ABC transporter 646 780 IPR003439 GO:0005524
Pral478g00001 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 851 IPR003439 GO:0005524
Pral478g00001 1483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 313 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral478g00001 1483 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1471 - -
Pral478g00001 1483 FunFam ABC transporter C family member 5 886 1218 - -
Pral478g00001 1483 SMART AAA_5 1263 1446 IPR003593 GO:0016887
Pral478g00001 1483 SMART AAA_5 655 828 IPR003593 GO:0016887
Pral478g00001 1483 CDD ABC_6TM_ABCC_D2 919 1212 IPR044726 GO:0140359
Pral478g00001 1483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral478g00001 1483 Pfam ABC transporter transmembrane region 921 1161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral478g00001 1483 Pfam ABC transporter transmembrane region 313 579 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral478g00001 1483 Gene3D - 605 868 IPR027417 -
Pral478g00001 1483 SUPERFAMILY ABC transporter transmembrane region 301 606 IPR036640 GO:0005524|GO:0016020
Pral478g00001 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 851 IPR027417 -
Pral478g00001 1483 CDD ABCC_MRP_domain1 628 828 - -
Pral478g00001 1483 Gene3D ABC transporter type 1, transmembrane domain 284 604 IPR036640 GO:0005524|GO:0016020
Pral478g00001 1483 Gene3D ABC transporter type 1, transmembrane domain 884 1218 IPR036640 GO:0005524|GO:0016020
Pral478g00001 1483 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Pral478g00001 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1469 IPR027417 -
Pral478g00001 1483 CDD ABCC_MRP_domain2 1235 1455 - -
Pral478g00001 1483 SUPERFAMILY ABC transporter transmembrane region 910 1217 IPR036640 GO:0005524|GO:0016020
Pral478g00001 1483 CDD ABC_6TM_ABCC_D1 314 601 IPR044746 GO:0140359
Pral478g00001 1483 FunFam ABC transporter C family member 10 611 864 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral478g00001 Pral-Chr478 35357 43839 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral478g00001 622 1471 Calmodulin-binding Proteins AT2G36910 23.983 9.72e-54 205
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral478g00001 K05666 - gmx:100811468 2324.67