Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4789g00021 ATGGTGGCACACGAAGGTTCTCTGTCAGCGGCGGCTAAACAAGCGGAGCAACTGAAACTACTCGGAAACTCTTGTTTCAAAAAAGATCGTTTCGGGGCCGCCATCGATGCCTACACCGAGGCAATCACTCTGTGCCCTAACAATACGGTTTATTGGACGAATCGTGCCCTTTGTCACCGGAGGCGCAATGACTGGGCTAAGGTAGAAGAAGACAGCCGGAGGGCTATTCAACTAGACAACAAATCAGTCAAGGCGCATTACATGTTGGGGCTTGCACTGCTGCAGAGACAAGAATATATGGAAGGGGTCAGAGAACTGGAGAAGGCTTTGGATCTTGGGAGGGGTGCCAATCCTAATGGCTATATGGTAGAGGAGATTTGGCAGGAGCTTGCGAAAGCAAAATACCTTGAGTGGGAAAATGCATCTACCAAGAGATCATGGGAATTGCAGCGTTTGAAATCAACTTGTGAACATGCTCTAAATGAGAAGTATTCTTGTTATGTCTCTCAAATGGAAGGGTTTATAGATGATGTTGATGCTTTGCATTCACAAGAACTCAAAGCTTTAGAAAGAGTTTTTTGTGAAGCTGCAAAGGCTGACATGCCTACAGAGATCCCAGATTACTTATGCTGTAGAATCACTCTTGATATTCTTCGAGATCCTGTAATTACTCCAAGTGGACATACATATGAGAGGGCAGTAATTCTTCAACACCTTCAAAAGAGTAACTTTGACCCAATTACACGGGAACCACTTAATCCATCACAGCTTGTACCAAATTTGGCAATAAAAGAAGCAGTTCAAGCATTCTTGGACAAACATGGTTGGGCATACAAAGTATAG 843 0.4413 MVAHEGSLSAAAKQAEQLKLLGNSCFKKDRFGAAIDAYTEAITLCPNNTVYWTNRALCHRRRNDWAKVEEDSRRAIQLDNKSVKAHYMLGLALLQRQEYMEGVRELEKALDLGRGANPNGYMVEEIWQELAKAKYLEWENASTKRSWELQRLKSTCEHALNEKYSCYVSQMEGFIDDVDALHSQELKALERVFCEAAKADMPTEIPDYLCCRITLDILRDPVITPSGHTYERAVILQHLQKSNFDPITREPLNPSQLVPNLAIKEAVQAFLDKHGWAYKV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4789g00021 280 ProSiteProfiles U-box domain profile. 204 277 IPR003613 GO:0004842|GO:0016567
Pral4789g00021 280 SUPERFAMILY RING/U-box 200 278 - -
Pral4789g00021 280 CDD RING-Ubox_CHIP 205 274 IPR045202 -
Pral4789g00021 280 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Pral4789g00021 280 SMART tpr_5 49 82 IPR019734 GO:0005515
Pral4789g00021 280 SMART tpr_5 15 48 IPR019734 GO:0005515
Pral4789g00021 280 SMART tpr_5 83 116 IPR019734 GO:0005515
Pral4789g00021 280 Pfam U-box domain 205 276 IPR003613 GO:0004842|GO:0016567
Pral4789g00021 280 SUPERFAMILY TPR-like 10 133 IPR011990 GO:0005515
Pral4789g00021 280 SMART Ubox_2 208 270 IPR003613 GO:0004842|GO:0016567
Pral4789g00021 280 Pfam Tetratricopeptide repeat 15 48 IPR001440 GO:0005515
Pral4789g00021 280 Gene3D Tetratricopeptide repeat domain 7 166 IPR011990 GO:0005515
Pral4789g00021 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 277 IPR013083 -
Pral4789g00021 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4789g00021 Pral-Chr4789 182706 186257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4789g00021 9 280 U-box Gene Family AT3G07370 65.934 5.39e-133 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4789g00021 K09561 - gmx:100796519 434.106