Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4789g00020 ATGGCGAAGCCGGGAGTGTTGGAAGCTGATCCAACGGTGACGGCGAAGGCAATGGAGCTGAAGAAGGAGTTGCAGAGATTGGTAAAGTCAATTGTTGAAGATGAGAATCATTACGGCATTGAGGCCATCGATACGACCATGGAGACGCTGTCGTTGCTGAGGGAGCTGAAGCTCAGCAAGAGATCGACGACGACGTCGTCGTCGTCGTCTTCGTCACTGTCTTTGACGGTTCGCCATAAAACCGGCTTAAATTGCCCCGAAGAATTCAAATGCCCTCTTTCCAAGCAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGAGAGAACGTTCATTCAAAAGTGGCTGAAAGCCGGCAACCGGACATGTCCACGGACACAGCAAGTCCTCTCACACGCTGTTCTCACTCCAAATTACCTAATAAGGGAAATGATTGAGAAATGTTGTAGAACCCAAGGGTTTGAATTTTCCAACCATGTTCACTATATCAATGAGGAAGCTGTAATAGAACCAGACCATGGTCATTTTCTTTCTTTGCTTGAGAAGGCGTCTTCATCAGCACTTTCTGAACAGAAAGCTGCAGCAAAGGAGCTCCGGATTCTGACAAAGAAAATGCCTTCTTTCCGGGTATTTTTTGGTGAGTTTTCAGATGCCGTTCCCAAATTGCTTAAACCGATCTGTGGGAGTCACTCTCTTGGTAATGTTCACCCTGACCTCCAAGAAGATGTTATCACAACACTCCTTAATATCTCCATCCATGACAACAACAAGAAGCTTGTGGCAGAAACTCCCTTGGTAATTCCTCTCCTCATGAGGGCATTGAGATCAGGAACAATAGCAACACGAAGCAATGCCGCCGCCGCCCTTTTCACTTTGTCAGCTCTAGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCCTTGAAGCCTCTGGTTGACCTTTTGGAAGAAGGGCATCCCTTAGCCATGAAAGATGTTGCATCAGCAATTTTTACTTTATGTGTCCTTCAAGAGAACAAGGCAAGAGCAGTGAAGGATGGCACAGTGAAGGTGATTGTAAAGAAGATTGTTGACCGGGTTTATGTCGACGAACTACTAGCCATTCTTGCCTTGCTCTCAAGTCACCAGAAGGCAATTCAGGACATGGGAGAGCTTGGAGCTGTTCCTAGCTTGCTGAGTTTAATCAGAGAGACCACTTGTGAACGAAACAAAGAGAATTGCATTGCAATCCTTCAGACTATCTGTCTTCATGACAGAACCAGGTTGAAGGAGATAAAAGAAGAAGAGAACAGACATAAAACAATCTCAGAGCTTGCACAAAACGGAACTTCAAGAGCTAAGAGGAAGGCTGGTGGAATCCTTGAGCGCCTAAACAGGGTTGTTAATATTACACACACTGCATAA 1413 0.4544 MAKPGVLEADPTVTAKAMELKKELQRLVKSIVEDENHYGIEAIDTTMETLSLLRELKLSKRSTTTSSSSSSSLSLTVRHKTGLNCPEEFKCPLSKQLMRDPVIVASGQTYERTFIQKWLKAGNRTCPRTQQVLSHAVLTPNYLIREMIEKCCRTQGFEFSNHVHYINEEAVIEPDHGHFLSLLEKASSSALSEQKAAAKELRILTKKMPSFRVFFGEFSDAVPKLLKPICGSHSLGNVHPDLQEDVITTLLNISIHDNNKKLVAETPLVIPLLMRALRSGTIATRSNAAAALFTLSALDSNKELIGKSGALKPLVDLLEEGHPLAMKDVASAIFTLCVLQENKARAVKDGTVKVIVKKIVDRVYVDELLAILALLSSHQKAIQDMGELGAVPSLLSLIRETTCERNKENCIAILQTICLHDRTRLKEIKEEENRHKTISELAQNGTSRAKRKAGGILERLNRVVNITHTA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4789g00020 470 SUPERFAMILY ARM repeat 177 460 IPR016024 -
Pral4789g00020 470 SUPERFAMILY RING/U-box 83 161 - -
Pral4789g00020 470 FunFam RING-type E3 ubiquitin transferase 84 158 - -
Pral4789g00020 470 Pfam U-box domain 86 150 IPR003613 GO:0004842|GO:0016567
Pral4789g00020 470 Coils Coil 17 37 - -
Pral4789g00020 470 PANTHER U BOX DOMAIN-CONTAINING 20 460 - -
Pral4789g00020 470 ProSiteProfiles U-box domain profile. 84 158 IPR003613 GO:0004842|GO:0016567
Pral4789g00020 470 Gene3D - 218 362 IPR011989 -
Pral4789g00020 470 SMART arm_5 298 338 IPR000225 GO:0005515
Pral4789g00020 470 SMART arm_5 256 297 IPR000225 GO:0005515
Pral4789g00020 470 SMART arm_5 378 419 IPR000225 GO:0005515
Pral4789g00020 470 Gene3D - 366 463 IPR011989 -
Pral4789g00020 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 164 IPR013083 -
Pral4789g00020 470 SMART Ubox_2 88 151 IPR003613 GO:0004842|GO:0016567
Pral4789g00020 470 FunFam RING-type E3 ubiquitin transferase 169 466 - -
Pral4789g00020 470 CDD RING-Ubox_PUB 86 138 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4789g00020 Pral-Chr4789 173114 176772 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4789g00020 147 470 U-box Gene Family AT3G07360 61.515 3.48e-134 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4789g00020 - - pcin:129287872 789.26