Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4789g00018 ATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGAGAGAACGTTCATTCAAAAGTGGCTGAAAGCCGGCAACCGGACATGTCCACGGACACAGCAAGTCCTCTCACACGCTGTTCTCACTCCAAATTACCTAATAAGGGAAATGATTGAGAAATGTTGTAGAACCCAAGGGTTTGAATTTTCCAACCATGTTCACTATATCAATGAGGAAGCTGTAATAGAACCAGACCATGGTCATTTTCTTTCTTTGCTTGAGAAGGCGTCTTCATCAGCACTTTCTGAACAGAAAGCTGCAGCAAAGGAGCTCCGGATTCTGACAAAGAAAATGCCTTCTTTCCGGGTATTTTTTGGTGAGTTTTCAGATGCCGTTCCCAAATTGCTTAAACCGATCTGTGGGAGTCACTCTCTTGGTAATGTTCACCCTGACCTCCAAGAAGATGTTATCACAACACTCCTTAATATCTCCATCCATGACAACAACAAGAAGCTTGTGGCAGAAACTCCCTTGGTAATTCCTCTCCTCATGAGGGCATTGAGATCAGGAACAATAGCAACACGAAGCAATGCCGCCGCCGCCCTTTTCACTTTGTCAGCTCTAGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCCTTGAAGCCTCTGGTTGACCTTTTGGAAGAAGGGCATCCCTTAGCCATGAAAGATGTTGCATCAGCAATTTTTACTTTATGTGTCCTTCAAGAGAACAAGGCAAGAGCAGTGAAGGATGGCACAGTGAAGGTGATTGTAAAGAAGATTGTTGACCGGGTTTATGTCGACGAACTACTAGCCATTCTTGCCTTGCTCTCAAGTCACCAGAAGGCAATTCAGGACATGGGAGAGCTTGGAGCTGTTCCTAGCTTGCTGAGTTTAATCAGAGAGACCACTTGTGAACGAAACAAAGAGAATTGCATTGCAATCCTTCAGACTATCTGTCTTCATGACAGAACCAGGTTGAAGGAGATAAAAGAAGAAGAGAACAGACATAAAACAATCTCAGAGCTTGCACAAAACGGAACTTCAAGAGCTAAGAGGAAGGCTGGTGGAATCCTTGAGCGCCTAAACAGGGTTGTTAATATTACACACACTGCATAA 1122 0.4403 MRDPVIVASGQTYERTFIQKWLKAGNRTCPRTQQVLSHAVLTPNYLIREMIEKCCRTQGFEFSNHVHYINEEAVIEPDHGHFLSLLEKASSSALSEQKAAAKELRILTKKMPSFRVFFGEFSDAVPKLLKPICGSHSLGNVHPDLQEDVITTLLNISIHDNNKKLVAETPLVIPLLMRALRSGTIATRSNAAAALFTLSALDSNKELIGKSGALKPLVDLLEEGHPLAMKDVASAIFTLCVLQENKARAVKDGTVKVIVKKIVDRVYVDELLAILALLSSHQKAIQDMGELGAVPSLLSLIRETTCERNKENCIAILQTICLHDRTRLKEIKEEENRHKTISELAQNGTSRAKRKAGGILERLNRVVNITHTA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4789g00018 373 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Pral4789g00018 373 SMART arm_5 159 200 IPR000225 GO:0005515
Pral4789g00018 373 SMART arm_5 201 241 IPR000225 GO:0005515
Pral4789g00018 373 SMART arm_5 281 322 IPR000225 GO:0005515
Pral4789g00018 373 PANTHER U BOX DOMAIN-CONTAINING 1 363 - -
Pral4789g00018 373 SUPERFAMILY RING/U-box 1 64 - -
Pral4789g00018 373 Gene3D - 121 265 IPR011989 -
Pral4789g00018 373 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Pral4789g00018 373 FunFam RING-type E3 ubiquitin transferase 72 369 - -
Pral4789g00018 373 Gene3D - 267 368 IPR011989 -
Pral4789g00018 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Pral4789g00018 373 CDD RING-Ubox_PUB 1 41 IPR045210 -
Pral4789g00018 373 Pfam U-box domain 1 53 IPR003613 GO:0004842|GO:0016567
Pral4789g00018 373 SUPERFAMILY ARM repeat 79 363 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4789g00018 Pral-Chr4789 150306 176772 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4789g00018 50 373 U-box Gene Family AT3G07360 61.515 5.21e-135 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4789g00018 - - pcin:129287872 646.736