Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4789g00013 ATGGAGAACGAATTCTTCCTCAATGCCGCTTCCCTTCACTTCGAACCTTCTTCTTCTTCTTCAATGCCCGCGTGGCCATCACTCTCATCCGCCATGGATGTTCAGGCTGCCGTCCTCAATTGCACTTCCGACCAACCCCACGATTGCTTTTACAACAACGCCAAATGGGATAAGTCAACGGATCATCATGGTCTTCAGTTCGATTCTGCTCTGAGCTCGATGGTTTCTTCTCCGGCAGCGTCCAATTCCAATGTTATGCCCAATAATGAGAATTCCATCATCAGGGAACTGATAGGAAAATTGGGGAACATTGGGGCATCTCCTTACGCTAATGGCGGTAATAGCACTGATACTTCGTGTTACAGCACTCCCTTGAGCTCGCCTCCGAAGATGAACATGATGAACCAGCTGGTGAAAGAGAACTTGCCCAGTTTAGGGAAATCGATGGTTTTGAATTCTAATGTTGCAGAGTTCTCACCTGATCCTGGTTTTGCAGAGAGAGCCGCCAAGTTTTCTTGCTTTGGAAGCAGGAGCTTCAATGGCAGAACATGCCAGCTAGGCATGAACAACGGTCAATTGTCTCTAAGATCTACTCCATCAATGGAAAATGAGAAGCTCGCCCGAGTGTCAAGCAGTCCTACCCTGAAAGCACTTGGATCTCAAACGGAAGTGGCGAATTCCCAAGAGGAATCGACAATCTCTGAGCAAACCCCAAATGGGGGAAATGGGGTGAATGCGAATTCGAGGAAAAGAAAAGCTTCTTCCAAGGGAAATACCAAAGAAACTTCAACTTCAACCAATCCCACTCCCAAGGCTAATGAAACCAATGAAGATTCAAATGCAAAGCGCAGCAAGCCAAACGAGGGTGAAGGGAATGAAAATGGAACCACGAAGGCAGAGGAAGACTCAAAAGGAGGTACAAGCAATGCAGGAGATGAGAAACAGACCAAGAGTAACTCATCAAAACCTCCTGAAGCGCCCAAAGACTACATTCATGTCAGAGCAAGAAGAGGCCAAGCCACTGACAGCCACAGTCTTGCAGAAAGAGTCCGGAGGGAAAAAATCAGTGAGAGAATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGTAAAGCACTTATGCTTGATGAAATCATAAACTATGTGCAGTCATTGCAGCGTCAGGTTGAGTTTTTATCTATGAAACTGGCTTCTGTGAACACCAGGCTGGACTTCAACATTGACAATCTAATCTCAAAAGACATGTTTCAACCAAATACCTCTTTGGCACATCCAATATTCCCTCTAGATTCCTCAGCACAAGCCTTTTATGGGCAACACACTCAGCAAAACCCAGGAATCCACAATAACACTCTTAATGGTGTTATGTCCCACAGCACAGTAGACCCATTAGAAACTGCTTCTCTGTGCCAAAACATGGGCATGCAATTGCCTGCCCTTAATGGCTTTAATGAAGGTGGTTCTCAGTTTCCAGCTGCATTCTGTGAGGATGACCTTCACACCATTGTTCAGATGGGATTTGGCCAAAGTGGAAATGGAAAATCACCCAGTCATTCCCAGGACTTCAACGGTTCAAATCAAGTCACCCATCTGAAAGTTGAACCCTAA 1620 0.4574 MENEFFLNAASLHFEPSSSSSMPAWPSLSSAMDVQAAVLNCTSDQPHDCFYNNAKWDKSTDHHGLQFDSALSSMVSSPAASNSNVMPNNENSIIRELIGKLGNIGASPYANGGNSTDTSCYSTPLSSPPKMNMMNQLVKENLPSLGKSMVLNSNVAEFSPDPGFAERAAKFSCFGSRSFNGRTCQLGMNNGQLSLRSTPSMENEKLARVSSSPTLKALGSQTEVANSQEESTISEQTPNGGNGVNANSRKRKASSKGNTKETSTSTNPTPKANETNEDSNAKRSKPNEGEGNENGTTKAEEDSKGGTSNAGDEKQTKSNSSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFNIDNLISKDMFQPNTSLAHPIFPLDSSAQAFYGQHTQQNPGIHNNTLNGVMSHSTVDPLETASLCQNMGMQLPALNGFNEGGSQFPAAFCEDDLHTIVQMGFGQSGNGKSPSHSQDFNGSNQVTHLKVEP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4789g00013 539 MobiDBLite consensus disorder prediction 276 308 - -
Pral4789g00013 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
Pral4789g00013 539 FunFam Basic helix-loop-helix transcription factor 336 408 - -
Pral4789g00013 539 Gene3D - 336 411 IPR036638 GO:0046983
Pral4789g00013 539 Coils Coil 386 406 - -
Pral4789g00013 539 MobiDBLite consensus disorder prediction 188 275 - -
Pral4789g00013 539 MobiDBLite consensus disorder prediction 309 323 - -
Pral4789g00013 539 SMART finulus 345 395 IPR011598 GO:0046983
Pral4789g00013 539 CDD bHLH_AtBPE_like 329 414 - -
Pral4789g00013 539 MobiDBLite consensus disorder prediction 188 328 - -
Pral4789g00013 539 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 228 447 IPR024097 GO:0006355
Pral4789g00013 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 408 IPR036638 GO:0046983
Pral4789g00013 539 Pfam Helix-loop-helix DNA-binding domain 343 390 IPR011598 GO:0046983
Pral4789g00013 539 MobiDBLite consensus disorder prediction 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4789g00013 Pral-Chr4789 98255 101176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4789g00013 1 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 47.843 2.51e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4789g00013 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4789g00013 - - gmx:100812081 711.835