Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4786g00003 ATGGGGTTGACCTCAGGCTCCAATATCAACCAGCAATCGTCTTCTAAAATGCTACCTCCACGCCAGCAATCTCGTGTTGGAGGACTGCAAACTTCACTATCCCTAGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAATATTCGAGAATCTCCTACTGAAAGTGCTAGTTCACGAGAAACCTGGCCCACTGCTGAAGCTATTGCTGCAAAAAAAATGGCAAATGGGAAGGCTGAGAATGATTGCCCTGAGCTGTCAGTCATCCGTCGTGTTTCTAGTGCCAACAAAATCACCCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATATCTGAAAAGATGCATCGTCTACCTGATGAATTTTTAGAAGAACTGAAGAACAGCCTACGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTCTTCACTTTGCAGAGGCTTGTTCAAAGTCGAACTGATTTGACGGCCAAGACATTGATCAGAGCACATCGTGTGCAGCTTGAAATCCTCGTGGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCGGTCTTTCACAACCTTCCCTCATTGAGATCTTTGTGTACAGGAGATGCAGAAATATCGCTTGTCAGAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCAGCAGGAATGGTTTCTGCAATCTCTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACGTGCCGCTGGATTGGGTGTGATTTATGCTCTCACTGGACTCATACAGATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCAGGACCAAGCGAAATGGTTTTCAGGTGCCAAGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCTGCATTGTGCGCCATCATGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCCAGGGGGAGGAAAATGTGCCGGAATTGTGATGATCTAAAGGAGAAAATGAAAAGTGGAATGGTGGAACCAAATGCTGCATGCAGTGCAATGTTGATGCTTTTCCAAGAGCTTGAGGTGGACTCCCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGACGCATGCAATAGAATTGCTGAAGTCGTGCAGGAGGCTATAAGAAAAATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGATGCTTGTGATCGAGAATTGGCAGATAAGGCGAGGGAAGCGGCAGAACTCAAGATGGACAGGCAAAAAAAGAAATCACAGATAGAAGAACTGGAGAGAATTGTAAGGCTTAAAACTGCAGAGGCTGATATGTTTCAGCTTAAGGCTAACGAGGCTAAACGAGAGGCTGAGAGGCTTCAGAGAATTGCTCTTGCCAAATCGGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTGAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCGCAGGGTAGTAGTGGCGACCCATCTCAGTTGCTGATGTATTCCAAAATCCATGATCTGCTCTATAGTGTGCCTCCCAAGGCAGATAGTCAGCCTAATGAGCGTCACCCATTCCGAACAAATCCATGA 1749 0.4511 MGLTSGSNINQQSSSKMLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAEAIAAKKMANGKAENDCPELSVIRRVSSANKITLQDIGRERVDIISEKMHRLPDEFLEELKNSLRVILEGGNGSQHREEFFTLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNIGLSQPSLIEIFVYRRCRNIACQNQLPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMVFRCQACKRTSELLGWVKDVFLHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKMCRNCDDLKEKMKSGMVEPNAACSAMLMLFQELEVDSPKSLENGESGRMIAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREAAELKMDRQKKKSQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQGSSGDPSQLLMYSKIHDLLYSVPPKADSQPNERHPFRTNP 582
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral4786g00003 582 Coils Coil 435 504 - -
Pral4786g00003 582 MobiDBLite consensus disorder prediction 1 68 - -
Pral4786g00003 582 Pfam PHD - plant homeodomain finger protein 211 334 IPR032881 -
Pral4786g00003 582 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 563 IPR004082 -
Pral4786g00003 582 SMART PHD_3 241 301 IPR001965 -
Pral4786g00003 582 MobiDBLite consensus disorder prediction 1 39 - -
Pral4786g00003 582 MobiDBLite consensus disorder prediction 563 582 - -
Pral4786g00003 582 PIRSF UCP025218 5 568 - -
Pral4786g00003 582 MobiDBLite consensus disorder prediction 54 68 - -
Pral4786g00003 582 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 119 141 IPR004082 -
Pral4786g00003 582 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 464 484 IPR004082 -
Pral4786g00003 582 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 503 525 IPR004082 -
Pral4786g00003 582 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 321 340 IPR004082 -
Pral4786g00003 582 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 161 176 IPR004082 -
Pral4786g00003 582 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 202 223 IPR004082 -
Pral4786g00003 582 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 176 191 IPR004082 -
Pral4786g00003 582 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 248 268 IPR004082 -
Pral4786g00003 582 Pfam Coiled-coil region of Oberon 429 561 IPR032535 -
Pral4786g00003 582 CDD PHD_OBE1_like 241 300 IPR047578 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral4786g00003 Pral-Chr4786 10966 13441 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4786g00003 211 313 PHD Gene Family AT5G57380 31.731 7.83e-09 56.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4786g00003 - - gmx:100795450 1008.82