Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4785g00003 ATGCAGTCTCTTATTTTGTCGATTGACATGGCTGTTCCAAAAGTGGACAAAAAGATGCTTGAAGAACTTGAAACAATGGGATTTCCAAGGGCAAAGGCAACTCGAGCACTCCATTATTCTGGCAATACTGATGTAGAGAATGCTATAAATTGGATAGTTGATCATGAGCATGATCCTGATATTGATGAGATTCCGTTGGTGGACGTAGATATTGAGATTGGTTCTTCTCAATCATTCCCTATAACAGAAGAAATGGAAATCAAAGCACAGAAGCTAAGGAAGAATAGTTCTCCTCATTCGTTCCCTATCACAGAAGAATCGCAAATCAAAGGACAGAAGCTAAGTAGGGAACAACTGCACAAGATGAAAGAAGAGAAAGAAAAGAAATTGGAGATAGAAAGGGAAAAGGAGAGAATCGAAGCAGGTAAGAAACTCAATGAGATGAAGCGAATTGCTGAAGAAAATGAAAGGCAACGACATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAGAGTCATGCGGAAACTAGAACAGGATAAGATAAACAGAAGGTCTACACTTGGGTTGCCCCTAGAAGGCCATCAAACCGTGAAATCTTCAGCTACAACAGTACAAAAAGAACAGAAACTGCAGAATCCAAGGCCTGTTTACACAGTTACAAAAGTTGAGCTCTTCAGAGAATGTTTGAGGTCCCTCAAGCTGAACCACCAGGATGAGCAAGCAAGAGTCAGAAGGGCCTTTGAAACACTCTTAATTTATGTTGGGAATGTTGTCAAGAATCCCAACCAGGAAAAATACAGGAAGATCCGATTTAGCAACCCATTATTCCAGGATAGAGTTGGGAGTTTGATTGGAGGTGTGGAATTTCTTGAACTATGTGGGTTTGAGAGAACGGGTGACTTTTTGTATCTTCCCGAGGAAAAGGTGGACATAACACTACTAAATTCAGCTGGATCCGTGTTGGAGTCTGCTATCACAAATCCCTTCTTTGGACTTTTCAGTACTCGGACAGTGTCATAA 1038 0.4104 MQSLILSIDMAVPKVDKKMLEELETMGFPRAKATRALHYSGNTDVENAINWIVDHEHDPDIDEIPLVDVDIEIGSSQSFPITEEMEIKAQKLRKNSSPHSFPITEESQIKGQKLSREQLHKMKEEKEKKLEIEREKERIEAGKKLNEMKRIAEENERQRHIALRKAEKEEEKRARERVMRKLEQDKINRRSTLGLPLEGHQTVKSSATTVQKEQKLQNPRPVYTVTKVELFRECLRSLKLNHQDEQARVRRAFETLLIYVGNVVKNPNQEKYRKIRFSNPLFQDRVGSLIGGVEFLELCGFERTGDFLYLPEEKVDITLLNSAGSVLESAITNPFFGLFSTRTVS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4785g00003 345 SUPERFAMILY PUG domain-like 223 335 IPR036339 -
Pral4785g00003 345 CDD UBA_PUB_plant 15 62 - -
Pral4785g00003 345 Gene3D - 227 329 - -
Pral4785g00003 345 PANTHER F13M7.16 PROTEIN 9 338 - -
Pral4785g00003 345 Pfam PUB domain 248 316 IPR018997 -
Pral4785g00003 345 SMART PGNneu 251 312 - -
Pral4785g00003 345 Coils Coil 115 142 - -
Pral4785g00003 345 SMART uba_6 16 54 IPR015940 -
Pral4785g00003 345 SUPERFAMILY UBA-like 12 65 IPR009060 GO:0005515
Pral4785g00003 345 Pfam UBA/TS-N domain 16 52 IPR015940 -
Pral4785g00003 345 MobiDBLite consensus disorder prediction 92 113 - -
Pral4785g00003 345 Coils Coil 152 188 - -
Pral4785g00003 345 MobiDBLite consensus disorder prediction 94 109 - -
Pral4785g00003 345 Gene3D - 16 62 - -
Pral4785g00003 345 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 14 55 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4785g00003 Pral-Chr4785 11044 14550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4785g00003 9 339 C2H2 Transcription Factor Family AT1G04850 52.096 6.87e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4785g00003 - - gmx:100781260 401.364