LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4784g00035	ATGCCTTTTGAAATAATGGATCAGAGGGCTGTATCTGCCTCATCACACTTTTTTGATGGTTCCTTTTACTCTGAGAATGCCGGACTGCAGAGGCCAAAATCTGCTCATGACCACTACCATCAAGGAAAGAATGGAATGGCAGTATCACCTGGCAGCATTTTGAATGCTTTGTCACCTCGGGAAATTAGTGCAAAGACTGGCTGGTCAAAGTCGTCAACAGGTCTGTCTGGAGAAACCATAGAAAAGCTACATATTGGTGAAGAAGGCAATGTTGATATGTTTAAAGCCTCCAAGGAAGCATTAAGTCATCATCCCAGATCTCAGTCAAATGTGCGTATGCAGCCAGCATCTAACCCATATGGTTTAATTGGCAATAAGATCATCACTAATGCTGCCTCACGTGAAAGTAGTTTATTCTCAAGCTCACTATCCGAGATATTTACCCGGAAGCTGAGGTTAACAGGAAATGATGTGGTGCCTCAGCAGCCTGTTACTGTTGGTTCACTTCCTGATGATGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACCATTGGAAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCATTGATGACTTAGGTCTCAATATTCTTACCAAAACTGGTGATGACCTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTCGAAGGTGATGAACATCTAACTTCAGGAAAAAGGACCAGTGGTCCAGATGGAGATCTTGGTTGCTTTGGAGGCTTCAAAGCTAAACTTCCTTTTGGTGAACATCCTTCTAGAACACTTTTTGTTAGAAACATTAACAGCAATGTTGAAGATTCTGAGCTAGAGACTCTATTTGAGCAATATGGTGATGTCCGAACCACTTATACTGCTTGCAAGCATCGTGGATTTGTTATGATTTCCTATTATGATATAAGAGCTGCACAAAATGCAATGAAAGCTCTTCAAAACAGGTCATTGAGGTCTAGGAAACTTGATATACATTATTCGATACCAAAGGTAAATGCGCCAGAGAAGGATACTAGCCATGGTACATTGCTTCTATCTGGTCTTGATTCTTCTATTTCACATGATGAACTTCTACAAATATTTGGATTTTATGGAGAAATCAAAGAAATTTGTGAATCTCCAGAAATGAATCATGACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCATGCTTTGAACAAGAGCGAAATTGCTGGGAGGCAGATCAAGCTTGAACCCCGCCATCCTAGGGGTTTAAGTGCAACATGTTTGATGCAGCAGTCTCAGAAGGAGCAGAATGAGTCTGACCTTAGTCAGAGTATCAGTGATAACTTATCATTGAGACAGAATGCAATAACGTCTTCTGGAGTAGTTGCATCTGGCTGCTTGGACAATGTATCTGATCATGGATTTCCAGCTACAATACGACAAACTATGGATCCCTTACCAATAAATGTATTCGCACATGTGAATTCTGGCATTCACAACACAGTGAGAGGGTCATCGATTCCTAGATTCCATCCTCATTCCCTTCCTGAGTACCATGATGGTTTAACTTGTGGCAGTCCTTACAACTTGTCAAGAACCTTTAGCAATGTATCTGGTAATATGGGTCCAGGAGTGACAGATGGCTCTGACAGCAGGCACACTCTGGGATTTGGTTCAACTGGGAAATTGTCGGACTTTAATGGAGGAGGAAATGTGAGCCTTCCTAATCATGGGCTTTATCACATGTGGAGCGGATCAAATGTGCACCAGCAAACTCCACCAGGCCCAATGGTTTGGCAGAAAACACCCTCATTTGTTAATGGTGTTTGTGCTCCTTGTCTTCAGCAGATGCCTGGCTTTCCCAGGTCATCATCTCATATGCTGAGAGCATCACATTTAGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCCCCATGGGACAGGCAGCATTCTTATTTGGCTGAGTCCCCTGAATCCTCTGGTTTTCACATGGGTTCTCTCGGTAGTCCAGGTTTTCCTGGTACATGGCAATTGCGTCCTCCTGAATTTTCTTCTCACAAAATGTTTCCTCATGTTGGTGGGAATGGCATGGACTTGTCACCCAATGCTGGGCAGAGCTCCCCAAATCAGTTATCACACGTTTTCCCTGGGAGACATCCCATGACTTCAATGTCTAAATTTGATCCTGCCAATGACAGAATGAGAAACCTCTATCACCGTAGAAGTGATGCTAACACTAACAGTGCTGACAAAAAGCAATTTGAACTTGACCTAAGTCGTATATTGAATGGCGAAGACACACGAACAACACTTATGATTAAGAACATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCCGCCATAGATGAGCAATGTCGGGGAACTTACGATTTTTTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCTTTCATCAACATGACTGATCCTAGTCAGATTATTCCTTTCCATAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCACTTGCCTATGCTCGAATTCAGGGAAAAGCTGCTCTTATTACACATTTCCAAAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTTCATACAGAGGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCATGGGTACCAATATTAGATTGAGGCCTGGAAAATCGCGTGCTAGGAGCCCATCGGCTTTAACTAGTGGAGAGGAGTCTTCCAATGGAATAAGTTCTTCAATGGGCTCTTCCAAAAACTCAGACTGA	2829	0.4263	MPFEIMDQRAVSASSHFFDGSFYSENAGLQRPKSAHDHYHQGKNGMAVSPGSILNALSPREISAKTGWSKSSTGLSGETIEKLHIGEEGNVDMFKASKEALSHHPRSQSNVRMQPASNPYGLIGNKIITNAASRESSLFSSSLSEIFTRKLRLTGNDVVPQQPVTVGSLPDDEPYKSLEEIEADTIGNLLPDEDDLFSGVIDDLGLNILTKTGDDLEDFDLFSSGGGMELEGDEHLTSGKRTSGPDGDLGCFGGFKAKLPFGEHPSRTLFVRNINSNVEDSELETLFEQYGDVRTTYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKVNAPEKDTSHGTLLLSGLDSSISHDELLQIFGFYGEIKEICESPEMNHDKFIEFYDVRAAEAALHALNKSEIAGRQIKLEPRHPRGLSATCLMQQSQKEQNESDLSQSISDNLSLRQNAITSSGVVASGCLDNVSDHGFPATIRQTMDPLPINVFAHVNSGIHNTVRGSSIPRFHPHSLPEYHDGLTCGSPYNLSRTFSNVSGNMGPGVTDGSDSRHTLGFGSTGKLSDFNGGGNVSLPNHGLYHMWSGSNVHQQTPPGPMVWQKTPSFVNGVCAPCLQQMPGFPRSSSHMLRASHLDHHVGSAPVVTASPWDRQHSYLAESPESSGFHMGSLGSPGFPGTWQLRPPEFSSHKMFPHVGGNGMDLSPNAGQSSPNQLSHVFPGRHPMTSMSKFDPANDRMRNLYHRRSDANTNSADKKQFELDLSRILNGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKAALITHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRLRPGKSRARSPSALTSGEESSNGISSSMGSSKNSD	942

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4784g00035	942	FunFam	Protein MEI2-like 1	351	447	-	-
	Pral4784g00035	942	SMART	rrm1_1	777	853	IPR000504	GO:0003723
	Pral4784g00035	942	SMART	rrm1_1	353	421	IPR000504	GO:0003723
	Pral4784g00035	942	SMART	rrm1_1	268	336	IPR000504	GO:0003723
	Pral4784g00035	942	CDD	RRM1_MEI2_like	266	341	IPR034453	-
	Pral4784g00035	942	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	267	340	IPR000504	GO:0003723
	Pral4784g00035	942	Pfam	RNA recognition motif 2	775	871	IPR007201	-
	Pral4784g00035	942	SUPERFAMILY	RNA-binding domain, RBD	264	426	IPR035979	GO:0003676
	Pral4784g00035	942	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	109	920	-	-
	Pral4784g00035	942	FunFam	MEI2-like protein 5 isoform 2	256	350	-	-
	Pral4784g00035	942	Gene3D	-	261	350	IPR012677	-
	Pral4784g00035	942	MobiDBLite	consensus disorder prediction	916	942	-	-
	Pral4784g00035	942	MobiDBLite	consensus disorder prediction	888	942	-	-
	Pral4784g00035	942	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	355	419	IPR000504	GO:0003723
	Pral4784g00035	942	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	269	333	IPR000504	GO:0003723
	Pral4784g00035	942	CDD	RRM3_MEI2_like	778	863	IPR034454	-
	Pral4784g00035	942	Gene3D	-	351	453	IPR012677	-
	Pral4784g00035	942	SUPERFAMILY	RNA-binding domain, RBD	777	862	IPR035979	GO:0003676
	Pral4784g00035	942	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	352	425	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4784g00035	Pral-Chr4784	360917	368971	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4784g00035	262	418	Eukaryotic Initiation Factors Gene Family	AT3G16380	26.404	1.28e-07	53.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4784g00035	-		-	pcin:129308788	1647.48