Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4784g00034 ATGCCTTTTGAAATAATGGATCAGAGGGCTGTATCTGCCTCATCACACTTTTTTGATGGTTCCTTTTACTCTGAGAAGAATGCCGGACTGCAGAGGCCAAAATCTGCTCATGACCACTACCATCAAGGAAAGAATGGAATGGCAGTATCACCTGGCAGCATTTTGAATGCTTTGTCACCTCGGGAAATTAGTGCAAAGACTGGCTGGTCAAAGTCGTCAACAGGTCTGTCTGGAGAAACCATAGAAAAGCTACATATTGGTGAAGAAGGCAATGTTGATATGTTTAAAGCCTCCAAGGAAGCATTAAGTCATCATCCCAGATCTCAGTCAAATGTGCGTATGCAGCCAGCATCTAACCCATATGGTTTAATTGGCAATAAGATCATCACTAATGCTGCCTCACGTGAAAGTAGTTTATTCTCAAGCTCACTATCCGAGATATTTACCCGGAAGCTGAGGTTAACAGGAAATGATGTGGTGCCTCAGCAGCCTGTTACTGTTGGTTCACTTCCTGATGATGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACCATTGGAAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCATTGATGACTTAGGTCTCAATATTCTTACCAAAACTGGTGATGACCTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTCGAAGGTGATGAACATCTAACTTCAGGAAAAAGGACCAGTGGTCCAGATGGAGATCTTGGTTGCTTTGGAGGCTTCAAAGCTAAACTTCCTTTTGGTGAACATCCTTCTAGAACACTTTTTGTTAGAAACATTAACAGCAATGTTGAAGATTCTGAGCTAGAGACTCTATTTGAGCAATATGGTGATGTCCGAACCACTTATACTGCTTGCAAGCATCGTGGATTTGTTATGATTTCCTATTATGATATAAGAGCTGCACAAAATGCAATGAAAGCTCTTCAAAACAGGTCATTGAGGTCTAGGAAACTTGATATACATTATTCGATACCAAAGGTAAATGCGCCAGAGAAGGATACTAGCCATGGTACATTGCTTCTATCTGGTCTTGATTCTTCTATTTCACATGATGAACTTCTACAAATATTTGGATTTTATGGAGAAATCAAAGAAATTTGTGAATCTCCAGAAATGAATCATGACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCATGCTTTGAACAAGAGCGAAATTGCTGGGAGGCAGATCAAGCTTGAACCCCGCCATCCTAGGGGTTTAAGTGCAACATGTTTGATGCAGCAGTCTCAGAAGGAGCAGAATGAGTCTGACCTTAGTCAGAGTATCAGTGATAACTTATCATTGAGACAGAATGCAATAACGTCTTCTGGAGTAGTTGCATCTGGCTGCTTGGACAATGTATCTGATCATGGATTTCCAGCTACAATACGACAAACTATGGATCCCTTACCAATAAATGTATTCGCACATGTGAATTCTGGCATTCACAACACAGTGAGAGGGTCATCGATTCCTAGATTCCATCCTCATTCCCTTCCTGAGTACCATGATGGTTTAACTTGTGGCAGTCCTTACAACTTGTCAAGAACCTTTAGCAATGTATCTGGTAATATGGGTCCAGGAGTGACAGATGGCTCTGACAGCAGGCACACTCTGGGATTTGGTTCAACTGGGAAATTGTCGGACTTTAATGGAGGAGGAAATGTGAGCCTTCCTAATCATGGGCTTTATCACATGTGGAGCGGATCAAATGTGCACCAGCAAACTCCACCAGGCCCAATGGTTTGGCAGAAAACACCCTCATTTGTTAATGGTGTTTGTGCTCCTTGTCTTCAGCAGATGCCTGGCTTTCCCAGGTCATCATCTCATATGCTGAGAGCATCACATTTAGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCCCCATGGGACAGGCAGCATTCTTATTTGGCTGAGTCCCCTGAATCCTCTGGTTTTCACATGGGTTCTCTCGGTAGTCCAGGTTTTCCTGGTACATGGCAATTGCGTCCTCCTGAATTTTCTTCTCACAAAATGTTTCCTCATGTTGGTGGGAATGGCATGGACTTGTCACCCAATGCTGGGCAGAGCTCCCCAAATCAGTTATCACACGTTTTCCCTGGGAGACATCCCATGACTTCAATGTCTAAATTTGATCCTGCCAATGACAGAATGAGAAACCTCTATCACCGTAGAAGTGATGCTAACACTAACAGTGCTGACAAAAAGCAATTTGAACTTGACCTAAGTCGTATATTGAATGGCGAAGACACACGAACAACACTTATGATTAAGAACATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCCGCCATAGATGAGCAATGTCGGGGAACTTACGATTTTTTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCTTTCATCAACATGACTGATCCTAGTCAGATTATTCCTTTCCATAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCACTTGCCTATGCTCGAATTCAGGGAAAAGCTGCTCTTATTACACATTTCCAAAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTTCATACAGAGGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCATGGGTACCAATATTAGATTGAGGCCTGGAAAATCGCGTGCTAGGAGCCCATCGGCTTTAACTAGTGGAGAGGAGTCTTCCAATGGAATAAGTTCTTCAATGGGCTCTTCCAAAAACTCAGACTGA 2832 0.4262 MPFEIMDQRAVSASSHFFDGSFYSEKNAGLQRPKSAHDHYHQGKNGMAVSPGSILNALSPREISAKTGWSKSSTGLSGETIEKLHIGEEGNVDMFKASKEALSHHPRSQSNVRMQPASNPYGLIGNKIITNAASRESSLFSSSLSEIFTRKLRLTGNDVVPQQPVTVGSLPDDEPYKSLEEIEADTIGNLLPDEDDLFSGVIDDLGLNILTKTGDDLEDFDLFSSGGGMELEGDEHLTSGKRTSGPDGDLGCFGGFKAKLPFGEHPSRTLFVRNINSNVEDSELETLFEQYGDVRTTYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKVNAPEKDTSHGTLLLSGLDSSISHDELLQIFGFYGEIKEICESPEMNHDKFIEFYDVRAAEAALHALNKSEIAGRQIKLEPRHPRGLSATCLMQQSQKEQNESDLSQSISDNLSLRQNAITSSGVVASGCLDNVSDHGFPATIRQTMDPLPINVFAHVNSGIHNTVRGSSIPRFHPHSLPEYHDGLTCGSPYNLSRTFSNVSGNMGPGVTDGSDSRHTLGFGSTGKLSDFNGGGNVSLPNHGLYHMWSGSNVHQQTPPGPMVWQKTPSFVNGVCAPCLQQMPGFPRSSSHMLRASHLDHHVGSAPVVTASPWDRQHSYLAESPESSGFHMGSLGSPGFPGTWQLRPPEFSSHKMFPHVGGNGMDLSPNAGQSSPNQLSHVFPGRHPMTSMSKFDPANDRMRNLYHRRSDANTNSADKKQFELDLSRILNGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKAALITHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRLRPGKSRARSPSALTSGEESSNGISSSMGSSKNSD 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4784g00034 943 CDD RRM3_MEI2_like 779 864 IPR034454 -
Pral4784g00034 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Pral4784g00034 943 Gene3D - 262 351 IPR012677 -
Pral4784g00034 943 SUPERFAMILY RNA-binding domain, RBD 265 427 IPR035979 GO:0003676
Pral4784g00034 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
Pral4784g00034 943 MobiDBLite consensus disorder prediction 34 53 - -
Pral4784g00034 943 MobiDBLite consensus disorder prediction 917 943 - -
Pral4784g00034 943 FunFam MEI2-like protein 5 isoform 2 257 351 - -
Pral4784g00034 943 FunFam Protein MEI2-like 1 352 448 - -
Pral4784g00034 943 SMART rrm1_1 778 854 IPR000504 GO:0003723
Pral4784g00034 943 SMART rrm1_1 354 422 IPR000504 GO:0003723
Pral4784g00034 943 SMART rrm1_1 269 337 IPR000504 GO:0003723
Pral4784g00034 943 MobiDBLite consensus disorder prediction 889 943 - -
Pral4784g00034 943 CDD RRM1_MEI2_like 267 342 IPR034453 -
Pral4784g00034 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 420 IPR000504 GO:0003723
Pral4784g00034 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Pral4784g00034 943 PANTHER RNA RECOGNITION MOTIF-CONTAINING 110 921 - -
Pral4784g00034 943 Pfam RNA recognition motif 2 776 872 IPR007201 -
Pral4784g00034 943 Gene3D - 352 454 IPR012677 -
Pral4784g00034 943 SUPERFAMILY RNA-binding domain, RBD 778 863 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4784g00034 Pral-Chr4784 360917 368971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4784g00034 263 419 Eukaryotic Initiation Factors Gene Family AT3G16380 26.404 1.26e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4784g00034 - - pcin:129308788 1654.03