Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4784g00032 ATGCAAATTGACAATCTTGATGATTCGCCCTTGTTCCGCCAACAGATTCAAAACTTGGAAGAAAGTGCGGACTCATTGAGATCCAGATGCTGGAAGTTCTACAAAGGATGTCGAAAATACACGGAGGGCCTTGAAGGGGAATATGATGGGGACATCGCATTTGCAAATGCCCTTGAAACATTTGGAGGAGGGCCTAGTGATCCTTTTTTTGATGTTGTGGGAGGATCTGTAATGACGAAGTTCACTGTTGCTTTGAGGGAAATCAGTACATACAAGGAACTGCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGATTACTACACTTTCTCAATGTTGACATCCTCGATGCCAAGGAAGCTCGAAAACGTTTTGACAAAGCCTCCATTCAGTATGAACAGGCACGGGATAAATTTATGTCTTTGAGGAAAAGCGCCAAGTTGGATACTGTCGCTGCCGTGGAAGAGGAAATGCACAATGCAAGGGACTCATTTGAGGAAGCCCGTTTCAACCTGGTTAGTGCTCTCAACCATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTTCCTGGAATTATGGATGCTCATCTTCGATATTTTCAACAGGGACACCAACTATTTCAGCAGATGGAACCTTTCATCAGTGAGGTTCTGAGTATTGCACAAAAGTCGAGAGAAAATTACAATACGGAGCAGATTTCCCTTCTTGAAAGAATCCAAGAGTACAAAAAACAAATTCATCAAGATAGTAAGCACAACTCGAATGGCCCCTCTCCTAATAGAGACATGCAGGCTTTTTGTAGGATACCGAATGATGTTGCCGATGCTGTAATGGAATCTGCTGCAAATGGCAAGGTTCAAATTCTTCGACAAGGATATCTGTCAAAGCGATCTTCCAATCTGAGAGGGGCATGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTATACTACCATCGCAAACCAGGGAACTGGTTGCAATCGCACGGCGGTGGCCAACAATCTGCAGCAAAGAATAATTCCACAGAACCTAGTTCTGGGCTTTTGAGCCGCCTTGCTTATCACCATGCTGTCGTCGATGAAAAAACCGCCGCACGTCGTGCAGTGAACTTGTTAACATCAACAATCAAGATTGATGCTGAGCAGACGGATTTAAGATTTTGTTTCAGAATTATTTCACCAACGAAGAACTTCACGCTGCAGGCAGAAAATTCGGCGGACCAAATGGAGTGGGTTGAAAAGATAACAGGAGTAATTGCCTCCTTGTTGAATGCCCAAACAATAGAAAAGCCTCTCTCAGCTGACTCTGAAGGCAATGATGGTAACCCTGCCAGTAGGACCAATATGTCGGAAAATCCTCCGGTTGATGATCAGGTTGTAAAAAGTGAAAAGCCAATTGAAGTTCTTAGAAAGGTGTGCGGGAATGACAAATGCGCTGATTGTGGTAAACCTGATCCGGACTGGGCATCCTTAAACCTCGGTATTCTTATATGCATTGAATGTTCTGGTGTACATCGTAATCTTGGTGTACATATATCTAAATATTTGGAGAAGGTCTTTGTTAACCGGAAGAAGAAAACCGAACGTATCCACTCACTGGCTCACCAGGTGTGGGAAAGCATCTGTGCCAACGACAAGAGAGCAGTGTACCGACATATTGTGAAGTCAGATGTGGATCTCAATACTATCGGTGAGCGAGTATCATATGGTGTGTCTTCTTGTCTCTCAGCTCCATTAGCTGGAATTGGCTTAACAGGTAATTCTGAGGTGCCTTCTTCAAGTAATATAGACTCGTCATCAAAAAGGGAAAATCAGCCGACCAGAAAATCTGAGGTGCCTTCTTCAAGTAATTCTGAGGTGCAACCCAAAAAACCAGAAAATCAGCTGGTAGAGGATAGACAAGATTGTTCTAGTTCTAGTGTGCTTCATCAGGCATGTCTAACTGCCGATTCAAGCATGGTGGAGCTCCTTCTCCAGTATGGTGCTGATATAAATGCTCCAGATTCAAGAGGTCAGACACCCCTGCATTGTTGTATAATCAATGGCAAGAGCGCAGCAGCAAAATTGCTTGCAGTAAGAGGGGCCAATCCTCACGCTGCGGATAAAGAAGGCAATACTCCTATTGAGCTTGCTTCGAGATCCGAATCTATTGGCGGCGATGTTTTCTCTCTCTTAGCAAGCAGATCGCAAGCCCACGAAGCCAGTTATCACCGGCCGAAAACCTCAGGAGTCAATGTATTGGGCCATGCTGCTGAAGAAAAAGTTCCTTTTTTTGAGGGAAAGGAAAAAAAATTGGATTGA 2313 0.4419 MQIDNLDDSPLFRQQIQNLEESADSLRSRCWKFYKGCRKYTEGLEGEYDGDIAFANALETFGGGPSDPFFDVVGGSVMTKFTVALREISTYKELLRSQVEHMLNDRLLHFLNVDILDAKEARKRFDKASIQYEQARDKFMSLRKSAKLDTVAAVEEEMHNARDSFEEARFNLVSALNHVEAKKRFEFLEAVPGIMDAHLRYFQQGHQLFQQMEPFISEVLSIAQKSRENYNTEQISLLERIQEYKKQIHQDSKHNSNGPSPNRDMQAFCRIPNDVADAVMESAANGKVQILRQGYLSKRSSNLRGAWKRRYFVLDSRGMLYYHRKPGNWLQSHGGGQQSAAKNNSTEPSSGLLSRLAYHHAVVDEKTAARRAVNLLTSTIKIDAEQTDLRFCFRIISPTKNFTLQAENSADQMEWVEKITGVIASLLNAQTIEKPLSADSEGNDGNPASRTNMSENPPVDDQVVKSEKPIEVLRKVCGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKYLEKVFVNRKKKTERIHSLAHQVWESICANDKRAVYRHIVKSDVDLNTIGERVSYGVSSCLSAPLAGIGLTGNSEVPSSSNIDSSSKRENQPTRKSEVPSSSNSEVQPKKPENQLVEDRQDCSSSSVLHQACLTADSSMVELLLQYGADINAPDSRGQTPLHCCIINGKSAAAKLLAVRGANPHAADKEGNTPIELASRSESIGGDVFSLLASRSQAHEASYHRPKTSGVNVLGHAAEEKVPFFEGKEKKLD 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4784g00032 770 ProSiteProfiles Ankyrin repeat profile. 674 706 IPR002110 GO:0005515
Pral4784g00032 770 PRINTS HIV Rev interacting protein signature 479 498 IPR001164 GO:0005096
Pral4784g00032 770 PRINTS HIV Rev interacting protein signature 498 515 IPR001164 GO:0005096
Pral4784g00032 770 CDD BAR_SFC_plant 15 215 IPR035670 -
Pral4784g00032 770 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Pral4784g00032 770 ProSiteProfiles ARF GTPase-activating proteins domain profile. 467 543 IPR001164 GO:0005096
Pral4784g00032 770 MobiDBLite consensus disorder prediction 613 628 - -
Pral4784g00032 770 SUPERFAMILY Ankyrin repeat 637 721 IPR036770 -
Pral4784g00032 770 MobiDBLite consensus disorder prediction 434 459 - -
Pral4784g00032 770 Pfam Putative GTPase activating protein for Arf 469 519 IPR001164 GO:0005096
Pral4784g00032 770 MobiDBLite consensus disorder prediction 434 464 - -
Pral4784g00032 770 Gene3D - 607 736 IPR036770 -
Pral4784g00032 770 Coils Coil 151 171 - -
Pral4784g00032 770 PANTHER CENTAURIN/ARF 5 518 IPR045258 GO:0005096
Pral4784g00032 770 ProSiteProfiles PH domain profile. 289 424 IPR001849 -
Pral4784g00032 770 MobiDBLite consensus disorder prediction 591 638 - -
Pral4784g00032 770 SMART ANK_2a 641 670 IPR002110 GO:0005515
Pral4784g00032 770 SMART ANK_2a 674 703 IPR002110 GO:0005515
Pral4784g00032 770 Gene3D - 290 428 IPR011993 -
Pral4784g00032 770 SMART arf_gap_3 467 575 IPR001164 GO:0005096
Pral4784g00032 770 CDD PH_ACAP 292 428 - -
Pral4784g00032 770 ProSiteProfiles Ankyrin repeat region circular profile. 674 706 - -
Pral4784g00032 770 SUPERFAMILY ArfGap/RecO-like zinc finger 467 519 IPR037278 -
Pral4784g00032 770 SUPERFAMILY BAR/IMD domain-like 4 312 IPR027267 -
Pral4784g00032 770 Gene3D Arf GTPase activating protein 458 549 IPR038508 -
Pral4784g00032 770 MobiDBLite consensus disorder prediction 591 605 - -
Pral4784g00032 770 SMART PH_update 290 426 IPR001849 -
Pral4784g00032 770 Pfam PH domain 291 423 IPR001849 -
Pral4784g00032 770 Coils Coil 227 247 - -
Pral4784g00032 770 ProSiteProfiles Ankyrin repeat profile. 641 673 IPR002110 GO:0005515
Pral4784g00032 770 SUPERFAMILY PH domain-like 290 442 - -
Pral4784g00032 770 CDD ArfGap 470 518 - -
Pral4784g00032 770 Gene3D Arfaptin homology (AH) domain/BAR domain 3 250 IPR027267 -
Pral4784g00032 770 Coils Coil 118 138 - -
Pral4784g00032 770 ProSiteProfiles Ankyrin repeat region circular profile. 641 672 - -
Pral4784g00032 770 Pfam Ankyrin repeats (3 copies) 646 730 IPR002110 GO:0005515
Pral4784g00032 770 Pfam BAR domain of APPL family 4 233 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4784g00032 Pral-Chr4784 319676 331439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4784g00032 459 520 C2H2 Transcription Factor Family AT3G07940 58.462 4.19e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4784g00032 K12489 - qsa:O6P43_023509 798.505