Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4784g00024 ATGGCAATTAATGAGTCTCTCTGTGAGCCCCTCGTCTTTAATCTTCATATATTAGAGTGTGTGTGTGTATATATAGGTACTTCTCTCTTAGCTCCATCTTGTGTTGTAAACTGTGATAGACCCACTTTTCTGCTGAGTCTTCGTCTCCCTCTTTTGTCACCTCACTGCACCTTCCCCTTCCTTCTCTTTCCTTCCATCACTTTCTTGATCGCTTCCTCAACCATCTCTCTCATGGCAGCTTTTTCCCATTGCCCCGACCACTTTCCTTTTCTCCTTGACACTAGCTCCTCCCTCTCTTCAGCCTTCGGAGACCAAGAACCTGCTATAAATTCCACTCCCCACCGCCACCTACCTCCCACTCACCAGACTATCTCTACTGATACTACTCAAAGCTCCGGGATGACTGTTAACGATTGTAACGAGTCTTCCGTCACCAGAACTCATGATCACTCTCCTGATACCTCCATGGCTCGAGTTAAGCTTGAAAATCCTGGCGGCGACGTGGTTCAGAAGAAGAAGAAGAAGAAGAGGCCAAACTACAGTAATGGTTCCTCCAAGGAGGGAGCAGAAGCAAGAAACAAGAGACAGAAGAAGAGCAGCAGTAATGGTGTGGTGAAAGAAGAGGAAAAGCCAAAATCAGAAGAGAAGAAGGAACAGAAGAAGAAAATTCCACCACAGCCCCCAACAGGCTATATACATGTCAGAGCTAGGAGGGGCGAAGCAACGGATAGCCACAGCCTCGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAGGATGTTGCAGCGACTCGTGCCAGGTTGTGATAAGATAACGGGAAAAGCGCTCATGTTAGACGAAATCATCAATTATGTTCAGTCCCTTCAGAATCAAGTGGAGTTTCTGTCGATGAAGCTTGCTTCTGTGAATCCCATGTTCGGAGATTTCACAATGGGCCAAGATACCCTCATGGGCACACCAGATAGGTTGAACAGTGTAGCTTCGCCTCTACCATTATCTGTTCCGCAATGCAGTACCAATCAGGCCACAAATTTTGCTGATGACTACCTTTTGAATGATTCAGCCACGGTTCTTCTTCAGGGAGAAAGACCAAATGCCTTCTCTTCCATGGATGTTCTTGGTGAGTTGTGGGATGAAGAAGACCAACGACAAAACTTTCCTAATCCCTGTGGCTTCTTCAGCACCAACTTATGGTCCTTTCAGTGTTAG 1215 0.465 MAINESLCEPLVFNLHILECVCVYIGTSLLAPSCVVNCDRPTFLLSLRLPLLSPHCTFPFLLFPSITFLIASSTISLMAAFSHCPDHFPFLLDTSSSLSSAFGDQEPAINSTPHRHLPPTHQTISTDTTQSSGMTVNDCNESSVTRTHDHSPDTSMARVKLENPGGDVVQKKKKKKRPNYSNGSSKEGAEARNKRQKKSSSNGVVKEEEKPKSEEKKEQKKKIPPQPPTGYIHVRARRGEATDSHSLAERVRREKISERMRMLQRLVPGCDKITGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFGDFTMGQDTLMGTPDRLNSVASPLPLSVPQCSTNQATNFADDYLLNDSATVLLQGERPNAFSSMDVLGELWDEEDQRQNFPNPCGFFSTNLWSFQC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4784g00024 404 MobiDBLite consensus disorder prediction 115 142 - -
Pral4784g00024 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 306 IPR036638 GO:0046983
Pral4784g00024 404 MobiDBLite consensus disorder prediction 102 248 - -
Pral4784g00024 404 MobiDBLite consensus disorder prediction 188 223 - -
Pral4784g00024 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 290 IPR011598 GO:0046983
Pral4784g00024 404 Pfam Helix-loop-helix DNA-binding domain 244 291 IPR011598 GO:0046983
Pral4784g00024 404 CDD bHLH_AtBPE_like 230 306 - -
Pral4784g00024 404 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 131 335 IPR024097 GO:0006355
Pral4784g00024 404 FunFam Basic helix-loop-helix transcription factor 237 309 - -
Pral4784g00024 404 SMART finulus 246 296 IPR011598 GO:0046983
Pral4784g00024 404 Gene3D - 237 308 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4784g00024 Pral-Chr4784 181582 184260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4784g00024 181 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 55.556 6.65e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4784g00024 HLH 9.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4784g00024 - - gmx:100796018 273.863