Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4784g00023 ATGGCAATTAATGAGTCTCTCTGTGAGCCCCTCGTCTTTAATCTTCATATATTAGAGTGTGTGTGTGTATATATAGGTACTTCTCTCTTAGCTCCATCTTGTGTTGTAAACTGTGATAGACCCACTTTTCTGCTGAGTCTTCGTCTCCCTCTTTTGTCACCTCACTGCACCTTCCCCTTCCTTCTCTTTCCTTCCATCACTTTCTTGATCGCTTCCTCAACCATCTCTCTCATGGCAGCTTTTTCCCATTGCCCCGACCACTTTCCTTTTCTCCTTGACACTAGCTCCTCCCTCTCTTCAGCCTTCGGAGACCAAGAACCTGCTATAAATTCCACTCCCCACCGCCACCTACCTCCCACTCACCAGACTATCTCTACTGATACTACTCAAAGCTCCGGGATGACTGTTAACGATTGTAACGAGTCTTCCGTCACCAGAACTCATGATCACTCTCCTGATACCTCCATGGCTCGAGTTAAGCTTGAAAATCCTGGCGGCGACGTGGTTCAGAAGAAGAAGAAGAAGAAGAGGCCAAACTACAGTAATGGTTCCTCCAAGGGAGCAGAAGCAAGAAACAAGAGACAGAAGAAGAGCAGCAGTAATGGTGTGGTGAAAGAAGAGGAAAAGCCAAAATCAGAAGAGAAGAAGGAACAGAAGAAGAAAATTCCACCACAGCCCCCAACAGGCTATATACATGTCAGAGCTAGGAGGGGCGAAGCAACGGATAGCCACAGCCTCGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAGGATGTTGCAGCGACTCGTGCCAGGTTGTGATAAGATAACGGGAAAAGCGCTCATGTTAGACGAAATCATCAATTATGTTCAGTCCCTTCAGAATCAAGTGGAGTTTCTGTCGATGAAGCTTGCTTCTGTGAATCCCATGTTCGGAGATTTCACAATGGGCCAAGATACCCTCATGGGCACACCAGATAGGTTGAACAGTGTAGCTTCGCCTCTACCATTATCTGTTCCGCAATGCAGTACCAATCAGGCCACAAATTTTGCTGATGACTACCTTTTGAATGATTCAGCCACGGTTCTTCTTCAGGGAGAAAGACCAAATGCCTTCTCTTCCATGGATGTTCTTGGTGAGTTGTGGGATGAAGAAGACCAACGACAAAACTTTCCTAATCCCTGTGGCTTCTTCAGCACCAACTTATGGTCCTTTCAGTGTTAG 1212 0.4645 MAINESLCEPLVFNLHILECVCVYIGTSLLAPSCVVNCDRPTFLLSLRLPLLSPHCTFPFLLFPSITFLIASSTISLMAAFSHCPDHFPFLLDTSSSLSSAFGDQEPAINSTPHRHLPPTHQTISTDTTQSSGMTVNDCNESSVTRTHDHSPDTSMARVKLENPGGDVVQKKKKKKRPNYSNGSSKGAEARNKRQKKSSSNGVVKEEEKPKSEEKKEQKKKIPPQPPTGYIHVRARRGEATDSHSLAERVRREKISERMRMLQRLVPGCDKITGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFGDFTMGQDTLMGTPDRLNSVASPLPLSVPQCSTNQATNFADDYLLNDSATVLLQGERPNAFSSMDVLGELWDEEDQRQNFPNPCGFFSTNLWSFQC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4784g00023 403 CDD bHLH_AtBPE_like 229 305 - -
Pral4784g00023 403 MobiDBLite consensus disorder prediction 115 142 - -
Pral4784g00023 403 MobiDBLite consensus disorder prediction 103 231 - -
Pral4784g00023 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 305 IPR036638 GO:0046983
Pral4784g00023 403 MobiDBLite consensus disorder prediction 189 222 - -
Pral4784g00023 403 FunFam Basic helix-loop-helix transcription factor 236 308 - -
Pral4784g00023 403 Pfam Helix-loop-helix DNA-binding domain 243 290 IPR011598 GO:0046983
Pral4784g00023 403 SMART finulus 245 295 IPR011598 GO:0046983
Pral4784g00023 403 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 131 334 IPR024097 GO:0006355
Pral4784g00023 403 Gene3D - 236 307 IPR036638 GO:0046983
Pral4784g00023 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 289 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4784g00023 Pral-Chr4784 181582 184262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4784g00023 183 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 56.604 7.42e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4784g00023 HLH 9.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4784g00023 - - gmx:100796018 273.863