Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4784g00020 ATGAAAGAATCGGAGAACGATATTCTCAACGTCTCCATTCAGCTTCTTTCTTCTCTTCTGGATGAGATTCCCACTGTTGTTAACTTTAAAGGTAAATGGTCTCTAATTAGAGCCAAACTCTTCGATCTTCAGACTCAGCTCACTGATTTCTCCTCTGAGTTTCCGAATTACTCGTCCAATTCTCTATCACTCGAGCTACTTCAGTCCATTTCATACACCTTAAAGGATGCCGTTTCGCTTGCCAAAGAATGCCAGTCCCCCAACTTATCCCAGGGAAAGCTTAAGACTCAGAGCGACATTGATTCGGTCCTCGCTAAGTTGGATCGCCATGTTAAAGACTGCGAGATTCTTTTCAGGAGTGGGGTTTTGCAGGACGCGGCCGTTTCCAGCTCGTCTAAGAGAGAGGCCGTACGGTCTGAATCCAGGAACTTGATTACTCGTCTGCAAATCGGTTCTGCTGAGTCCAGGAAGTCAGCGATGGTCTCCTTGTTGGGTTTACTCGAAGAGGATGATAAGAATGTGATGATAGCTGTGGCGCAGGGTGTGGTTCCGGTGCTTGTCCGCTTACTGGATTCTGCCTCTTCGGAGATGAAGGAGAAGACTGTTGCTGCCATCTCCAGAGTCTCCATGGTGGATAGTAGCAAGCATGTGTTGATCGCTGAAGGTTTGTTGCTTTTGAATCAATTGGTCCGAGTTCTCGATTCGGGGAGTGGATTTGCCAAACAGAAATCCTGCATAGCCCTCCAGGCTCTAAGTTTCTCGAAAGAGAATGCTAGAGCAATCGGGTCTAGAGGTGGAATCTCGTCACTGTTAGAGATTTGTCAAGCCGGCACTCCTGGTTCCCAAGCTTCGGCAGCAGGGGTTTTAAGAAATCTCTCTGTCTTTCCTGAAATTAGAGAGAATTTTATTGAGGAAAACACCGTTATTGTTCTACTGGGGCTCGCCTCATCGGGAACTGCATTAGCGCAAGAAAATGCAATTGGATGTTTGTCCAATTTAGTTTCTGAAGACGAAAGTTTAAAAATTTTATTTGTAAAGGAAGGAGGGATCGAGTGCCTGAAGAATTTTTGGGACTCAGCTCCGACAGTTCGGAGTCTTGAAGTCGCGGCTGAGTTTTTGAGTCACCTGGCTTCTAGTTCTCCGATTGCTGAAGTTCTTGTTTCTGATGGCTTTATACTCCGCCTTGTGGGCGTGTTGAACTGTGGAATTCTAGGGTTGAGAAGTGCGGCAGCTCGAGCTGTTTATGCTTTGGGGTCGTACAACACAAAATCGAGGAAGGAGATGGGTGAATGTGGATGTATGACCCCATTGATCAAGATGCTGGATGGCAAAGCTGTAGAAGAGAAAGAAGCAGCCGCAAAAGCGTTGTCGGTGCTCTTGTTGTATGCGGGCAATAGGAAAATTTTCCGGAAGGATGAGAGGGGCATAGCTAGTGCTGTTCAGCTGTTGGATCCTTCAATACAGAATTTGGATAAAAAATATCCTGTTTCAGTGCTGACGTCGCTTGTGCATTCAAAGAAATGTAGGAAACATATGGTGGCGGCCGGCGCTTGTGTATATACGCAGAAACTTGTTGAGATGGATATTGAGGGTGCCAAGAAACTCTTGGATAGCCTTGGTAGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAA 1656 0.462 MKESENDILNVSIQLLSSLLDEIPTVVNFKGKWSLIRAKLFDLQTQLTDFSSEFPNYSSNSLSLELLQSISYTLKDAVSLAKECQSPNLSQGKLKTQSDIDSVLAKLDRHVKDCEILFRSGVLQDAAVSSSSKREAVRSESRNLITRLQIGSAESRKSAMVSLLGLLEEDDKNVMIAVAQGVVPVLVRLLDSASSEMKEKTVAAISRVSMVDSSKHVLIAEGLLLLNQLVRVLDSGSGFAKQKSCIALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQASAAGVLRNLSVFPEIRENFIEENTVIVLLGLASSGTALAQENAIGCLSNLVSEDESLKILFVKEGGIECLKNFWDSAPTVRSLEVAAEFLSHLASSSPIAEVLVSDGFILRLVGVLNCGILGLRSAAARAVYALGSYNTKSRKEMGECGCMTPLIKMLDGKAVEEKEAAAKALSVLLLYAGNRKIFRKDERGIASAVQLLDPSIQNLDKKYPVSVLTSLVHSKKCRKHMVAAGACVYTQKLVEMDIEGAKKLLDSLGSGKIWGVFARP 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4784g00020 551 Pfam Armadillo/beta-catenin-like repeat 170 206 IPR000225 GO:0005515
Pral4784g00020 551 SMART arm_5 254 294 IPR000225 GO:0005515
Pral4784g00020 551 SMART arm_5 337 378 IPR000225 GO:0005515
Pral4784g00020 551 SMART arm_5 295 335 IPR000225 GO:0005515
Pral4784g00020 551 SMART arm_5 170 210 IPR000225 GO:0005515
Pral4784g00020 551 SMART arm_5 421 461 IPR000225 GO:0005515
Pral4784g00020 551 SMART arm_5 379 419 IPR000225 GO:0005515
Pral4784g00020 551 Gene3D - 382 538 IPR011989 -
Pral4784g00020 551 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 549 - -
Pral4784g00020 551 SUPERFAMILY ARM repeat 143 489 IPR016024 -
Pral4784g00020 551 Gene3D - 79 381 IPR011989 -
Pral4784g00020 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 223 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4784g00020 Pral-Chr4784 145578 147852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4784g00020 126 410 U-box Gene Family AT2G23140 27.431 2.56e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4784g00020 - - qsa:O6P43_030678 818.92