LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4784g00018	ATGGGTTGCGTGCTCGGAACGCGGGCGGATGGCGAAGGCCGACGGTCGGATTCCGGAACTCAGGATCACCGTCCTCGCGCTAGCCAGCGACATTCTGTCACTGACGGAGGTAATGCTGTTGTGGTTAGGAAGGAAGGGGCGGCGAGGGAGATGGAGGAGCAAGGGACTCGGCGTACCGGCGATTTCTCTGGGACTGTTCCGGCTCTGGAGAGACGGAAACTTAGACTTGATCCCTACGCTAAAACCGAACATGGTTGGCCGTTGTGGTTGATGGATGTGGCTGGCGAAGCTATACGAGATTGGTCTCCTCGTCGCGCCAACTCGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGTAATGTATACAAGGCTAGGGACCTTCTTACTGGAAAGATAGTGGCACTAAAGAAAGTTAGGTTTGATAATATGGAGCCAGAGAGCGTGAAGTTCATGGCAAGAGAAATTATTCTGTTGAGGCGGCTTGATCACCCCAATGTCTTAAAACTTGAAGGTTTAGTTACTTCAAGAATGTCATGCAGTCTATACTTAGTATTCCAGTATATGGAACACGATCTCGCAGGGCTTGCAGCTCGCCAAGGTGTTAAGTTTAACGAGCCTCAGGTGAAATGCTATGTGAAGCAATTACTCTCTGGCCTTGAGCATTGCCATAGTCGAGGTGTTTTGCACCGAGATATCAAGGGTTCCAATCTGCTCATTGATAATGAAGGAATCCTTAAAATTGCCGATTTTGGCCTCGCCGCTTTCTATGATCCTGAGAAAAAGCAGCCTATGACAAGTAGAGTTGTCACCCTTTGGTACCGGCCTCCTGAGCTTCTTCTTGGGGCTACACTCTATGGTGTCGGTGTTGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGAACAGAGGTTGAGCAACTGCACAAAATATTTAAATTATGTGGGTCTCCATCTGAGGAATATTGGAAGAAGTATAGATTGCCAAATGCTACACTCTTTAAGCCACAGCAGCCTTATAAACGTTGCCTTTCAGAAACCTTCAAAGATTTCCCACCTTCTTCTTTACCTCTAATAGAAACTCTCCTTGCAATGGATCCAGATGATCGTGGCACTGCCTCAGCTGCTCTTTGTAGTGAATTCTTTGCAACTGAGCCCTATGCTTGTGAACCATCAAGTTTACCGAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCTAAAAGCTCAAAGTGGGAAAGCTAACGCTGTTGATGGTGCTCGAAAAGTCAAAACACGTGATCGTGGTCGGGCCATTCCAGCTCCAGATGCCAACGCAGAATTGCAAACAAACATAGATAAGTGGAGAGCTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCACCTCCACATCAGGATGGAGCTGTTGGATATCCATTAGATTCATCCCGTAAAGCGCCTGTTTCCTTTGGTGGCACTGATGCTTCCTTTGGCTCAGCAATATTTAATTTAAAAGTATCAGGACCTGTTAGAAATCATGCTGCTGCAAGACCTCACGGAGGGAGGAAAACTAGTAAAGCAGACTCCCAGATGGCGTCATCATGGAAATTTATGCGAGCCTTCAAGCCATCATCAATAGGCCCATCAGTGAACTTATTATTTCGGAGCAAATAA	1719	0.4706	MGCVLGTRADGEGRRSDSGTQDHRPRASQRHSVTDGGNAVVVRKEGAAREMEEQGTRRTGDFSGTVPALERRKLRLDPYAKTEHGWPLWLMDVAGEAIRDWSPRRANSFEKLAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNMEPESVKFMAREIILLRRLDHPNVLKLEGLVTSRMSCSLYLVFQYMEHDLAGLAARQGVKFNEPQVKCYVKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLAAFYDPEKKQPMTSRVVTLWYRPPELLLGATLYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRCLSETFKDFPPSSLPLIETLLAMDPDDRGTASAALCSEFFATEPYACEPSSLPKYPPSKELDVKLRDEEARRLKAQSGKANAVDGARKVKTRDRGRAIPAPDANAELQTNIDKWRAVTHANAKSKSEKFPPPHQDGAVGYPLDSSRKAPVSFGGTDASFGSAIFNLKVSGPVRNHAAARPHGGRKTSKADSQMASSWKFMRAFKPSSIGPSVNLLFRSK	572

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pral4784g00018	572	Gene3D	Phosphorylase Kinase; domain 1	95	191	-	-
Pral4784g00018	572	MobiDBLite	consensus disorder prediction	10	30	-	-
Pral4784g00018	572	FunFam	probable serine/threonine-protein kinase At1g54610	96	191	-	-
Pral4784g00018	572	ProSitePatterns	Protein kinases ATP-binding region signature.	115	138	IPR017441	GO:0005524
Pral4784g00018	572	PANTHER	CELL DIVISION PROTEIN KINASE	107	397	-	-
Pral4784g00018	572	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	229	241	IPR008271	GO:0004672\|GO:0006468
Pral4784g00018	572	Pfam	Protein kinase domain	109	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pral4784g00018	572	CDD	STKc_CDK9_like	109	393	-	-
Pral4784g00018	572	SMART	serkin_6	109	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pral4784g00018	572	MobiDBLite	consensus disorder prediction	426	447	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4784g00018	Pral-Chr4784	130400	134684	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4784g00018	101	425	Core Cell Cycle Gene Families	AT5G10270	51.320	1.29e-114	348

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pral4784g00018		Pkinase	1.1e-66	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4784g00018	K08819		-	gmx:100807756	918.302

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