Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4783g00004 ATGGAGTGGAATATGAAAGCAGCGTCGTGGGATTTGGCTGAATTAGATGAAGCAGCAGGCTTACCCAGCATAGAAACAATTGATGGGTCAAGCAGATTTGGGAGTGATAGAAGTAAAGGGGAATTTTCCGTGGATTTGAAGCTTGGTCATGTGGGGAATTCTAGTAATGAACCAGCACTTGCCAAATGGAAAGATGTTGCAGGAGTCTCCAAAGTGATGACATCTTCTTCATCGTCTCCTTCAGGATCATCTAAGAGAGCTCGAGCAATTAACAATGGAACCCAGAATGTGTCATGCCTTGTCGACGGGTGCAATTCAGATCTTAGTAATTGTAGGGACTATCACCGGCGCCATAAGGTCTGCGAACTGCATTCTAAGACTCCAGTGGTCACAATTGGTGGTCACAAGCAAAGGTTCTGTCAACAGTGTAGCAGGTTTCATTCGCTGGAGGAATTTGATGAAGGGAAGAGAAGTTGCAGGAAACGCTTAGATGGACACAACCGACGGAGGAGGAAGCCGCAGGCAGAAGGAGTTGGGAGATCTGGAAGCTTTTTGTCCAATTACCAAGGCGCCCACTTGTTGCCCTTCTCAAGCTCACACGTGTATCCTTCCACTGCCATGGCTCACCCTGCTTGGAATGCAGATGTCAGGCTCCACCAAAACCCTCATCATCATCATCACCACCAACACCAACACCAGCAACTCCATCAGCTGGTTGATCATAAACAGGACCTCTTTCTGGGAGCTTCATCGTCATCATCCTCCTATGCAGAAGGGAATAATAACAACAACATTAATGTTAGCAAACATCAGTTAGCATTCTTGCAAGGTGATGACTCGACAGCATTGGAGAACAACCAGAGTAACAATCATCAGCAAGCTCTCCCGCCGCATGGTTCTGTGTGCCAAACGTTTCTGAGAGCCACGCCGTTACCGCCGGCAGCTCCACTTGCCGGCGAGCACCCTGATTCTCACTGTGCTCTCTCTCTTCTGTCATCCCCACAGACGCACACAAGTGGGAGTGGTTTGAGCCAAATGGTGCAGTCTCATCAACAAGCCATGTCGATTATGCAGCAGCAACACCAGCCCTTGGGACTGAGCCTGCATGATCATGGTCTGGAGACGGTGGACCCGGTGTTGGTTCACCATGGGAGTGACGAGTGTCCGACTATGTATAACATGAATGAGGCCCCTCCATTTCCTTTTCAGTGGGGATAG 1218 0.491 MEWNMKAASWDLAELDEAAGLPSIETIDGSSRFGSDRSKGEFSVDLKLGHVGNSSNEPALAKWKDVAGVSKVMTSSSSSPSGSSKRARAINNGTQNVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPVVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEGVGRSGSFLSNYQGAHLLPFSSSHVYPSTAMAHPAWNADVRLHQNPHHHHHHQHQHQQLHQLVDHKQDLFLGASSSSSSYAEGNNNNNINVSKHQLAFLQGDDSTALENNQSNNHQQALPPHGSVCQTFLRATPLPPAAPLAGEHPDSHCALSLLSSPQTHTSGSGLSQMVQSHQQAMSIMQQQHQPLGLSLHDHGLETVDPVLVHHGSDECPTMYNMNEAPPFPFQWG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4783g00004 405 Gene3D - 90 160 IPR036893 GO:0003677|GO:0005634
Pral4783g00004 405 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Pral4783g00004 405 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 377 IPR044817 GO:0003677
Pral4783g00004 405 Pfam SBP domain 99 172 IPR004333 GO:0003677
Pral4783g00004 405 SUPERFAMILY SBT domain 97 176 IPR036893 GO:0003677|GO:0005634
Pral4783g00004 405 MobiDBLite consensus disorder prediction 328 347 - -
Pral4783g00004 405 MobiDBLite consensus disorder prediction 163 182 - -
Pral4783g00004 405 FunFam Squamosa promoter-binding-like protein 14 90 160 - -
Pral4783g00004 405 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4783g00004 Pral-Chr4783 39339 42866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4783g00004 1 212 SBP-box Gene Family AT5G50670 55.000 3.73e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4783g00004 SBP 6.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4783g00004 - - mtr:25502014 400.979