Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00096 ATGGTCACGAAGATCATATCGGTCATACCAGCATTGGATACCCATACACCAATTTTTGCATCTTCTTTTACGATGGAGCTTATTAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTCAAAGTATTTCGAACCAGGAAGAAGTTTTTGGCTGGGCCATTTGAAATAGAGCCTATCAGGGTGACCCATTCCATCCCTGATTGTTGTGGTTTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGACTGGAAGATTGATGAACAACCACTAGACGGTAAAGTTTTTGACCGTGAAGTTTTGGAGGAACTTTCTAAAGAAGGAGTAACATTAATGATGAGTGATTCAACAAACATACTTTCACCTGGAAGAACAATTAGTGAATCTACTGTGGCGGATGCACTGTTAAGGCGTATTTCTGCTGCTAAAGGAAGGGTTATTACAACTCAGTTCGCATCAAATATACATCGTCTTGGAAGTGTGAACGCTGCAGCTGATTTAACTGGTAGAAAGATGGTGTTTGTTGGCATGTCTCTACGAACATATCTAGATGCAGCTTGGAAGGATGGAAAGGCACCATTTGACCCATCCACGCTGGTGAAAGTGGAGGATATTGATGCTTATGCTCCTAAGGATTTGCTGATTGTAACAACTGGATCTCAGGCAGAACCTCGTGCTGCCCTGAATCTTGCATCATATGGTGGTAGTCATTCTTTCAAGCTGACCAAGGAAGATATAATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGATGAACCGCATAGCAGAGATTGGATCATCAATAATAATGGGGAAGAATGAGGGGCTGCACACATCGGGTCATGCGTATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCGCAACATTTTCTTCCCATACACGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAGTCAACTGGCATTCGACACACTGCTGTTATTAAGAATGGAGAGATGCTTGGCGTTTCACACTTAAGAAATAGAAGAGTCCTTTCAAATGGTTTTGTTTCCCTTGGAAAAGAGAATTTACAGTTGAAGTACAGTGATGGGGACAAAGCATTTGGTACATCAAGTGAACTTTTTGTTGATGAAAGATTGAGAATTGCCTTAGATGGAATAATTGTGGTCAGCATGGAAATATTCCGGCCTCAAAATAGTGAGAGTCATGTTGAAAACACCTTAAAAGGGAAGATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGAAAGCTGTTGGATGCGCTTCATAAGGCTGCTCATGCTGCACTTTCAAGCTGCCCAGTAAACTGTCCATTTTATCACATGGAAAGAACTGTATCTGAGGTATTGAGGAAGTTGGTGAGGAAGTATAGCGGCAAAAGACCAGAAGTTATTGCTATTGCTGTAGAAAACCCTGCAGCTGTTCTTGCTGATGAGGTAAAAGCGAGGCTGTCTGGAAAATCTCATATGGGTCTTGGGACACCATCGTTGAGAAAAATAGTGGATGGACGTAACGAGGAAAAGAAGTCCAGCAAAATGGCTATAAAAGAAGATGATGGCACTGATGTTGAAGGACTCCTACCAGAGGAAGATATCCCTACTCCAAGTGGAGCTGATGCTGACTCCCCTGATTCAGAGGATTCAGATGAATTTTGGAAATCAGTCATCACACCTTCAAGGGCTGAAAAGTCGATCAAAGCTAACAATGGTTATATTCCACGAAAGCAGCAAGAGTCCCAGCAGATGAAAGATGATTCTGGAGACTCTGAAGAAGGCGAGTCTGAACCCAAGCCTTCAAAAACAGTGAAGAGAAATAAATGGAAGCCTGAGGAAGTGAAGAAGCTGATCGATATGCGTGGAGAGCTGAACGAGAGATTTCAAGTTGTGAAGGGAAGAATGATCCTCTGGGAGGAGATATCTCAAAAGTTGTTGGCTGATGGTATCAACAGAAGTCCAGGGCAATGTAAATCTCTGTGGACTTCTTTGATACAAAAATACGAGGAGATCAAGAATGGGAAGAACAAGAAAGGCTGGCCATATCTGGAGGACATGGACAGGATATTGTCGGATAAGGAGGCGCGGGCAGCAAAATGA 2151 0.424 MVTKIISVIPALDTHTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFLAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDEQPLDGKVFDREVLEELSKEGVTLMMSDSTNILSPGRTISESTVADALLRRISAAKGRVITTQFASNIHRLGSVNAAADLTGRKMVFVGMSLRTYLDAAWKDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSFKLTKEDIILYSAKVIPGNESRVMKMMNRIAEIGSSIIMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFVSLGKENLQLKYSDGDKAFGTSSELFVDERLRIALDGIIVVSMEIFRPQNSESHVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPFYHMERTVSEVLRKLVRKYSGKRPEVIAIAVENPAAVLADEVKARLSGKSHMGLGTPSLRKIVDGRNEEKKSSKMAIKEDDGTDVEGLLPEEDIPTPSGADADSPDSEDSDEFWKSVITPSRAEKSIKANNGYIPRKQQESQQMKDDSGDSEEGESEPKPSKTVKRNKWKPEEVKKLIDMRGELNERFQVVKGRMILWEEISQKLLADGINRSPGQCKSLWTSLIQKYEEIKNGKNKKGWPYLEDMDRILSDKEARAAK 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00096 716 ProSiteProfiles Myb-like domain profile. 618 682 IPR001005 -
Pral4782g00096 716 MobiDBLite consensus disorder prediction 519 541 - -
Pral4782g00096 716 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 288 325 IPR011108 -
Pral4782g00096 716 Gene3D - 626 687 - -
Pral4782g00096 716 MobiDBLite consensus disorder prediction 506 628 - -
Pral4782g00096 716 PANTHER RIBONUCLEASE J 6 716 - -
Pral4782g00096 716 SMART sant 622 684 IPR001005 -
Pral4782g00096 716 MobiDBLite consensus disorder prediction 597 628 - -
Pral4782g00096 716 Pfam Myb/SANT-like DNA-binding domain 623 706 IPR044822 -
Pral4782g00096 716 CDD GT1 624 689 - -
Pral4782g00096 716 Gene3D - 1 143 IPR036866 -
Pral4782g00096 716 SUPERFAMILY Metallo-hydrolase/oxidoreductase 14 345 IPR036866 -
Pral4782g00096 716 Gene3D - 244 363 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00096 Pral-Chr4782 745672 754900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00096 625 713 Trihelix Transcription Factor Family AT2G38250 34.783 4.90e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral4782g00096 Myb_DNA-bind_4 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00096 - - qsa:O6P43_022564 1117.06