Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00095 ATGGCTAGTTGTGGTTCTCTTTCATTGTGTCCATACAGCCTTTATCGTCACCCGAACCCAAAAAGGCGTCCCATTTTATGCTCGGCCGGCTCTTCTTCGCTCGTAGGTATTGATGGATCTAAAGTACCCCGCAAAAGATTAAGAAAAATTGAAGGTCCTGGAAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAATTTTATGAAGGATCTAATGGGCCACCCCTTCGAGTTCTTCCTATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACCATGATCGTTATATCCTTATTGATGCTGGTGTCATGTTCCCAGACTATGATGAGCTTGGAGTCCAAAAGATTATACCTGATACGACATTTATAAGAAAATGGAGGCACAAAATTGAGGCAGTTGTTATAACGCATGGTCACGAAGATCATATCGGTGCGTTGCCTTGGGTCATACCAGCATTGGATACCCATACACCAATTTTTGCATCTTCTTTTACGATGGAGCTTATTAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTCAAAGTATTTCGAACCAGGAAGAAGTTTTTGGCTGGGCCATTTGAAATAGAGCCTATCAGGGTGACCCATTCCATCCCTGATTGTTGTGGTTTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGACTGGAAGATTGATGAACAACCACTAGACGGTAAAGTTTTTGACCGTGAAGTTTTGGAGGAACTTTCTAAAGAAGGAGTAACATTAATGATGAGTGATTCAACAAACATACTTTCACCTGGAAGAACAATTAGTGAATCTACTGTGGCGGATGCACTGTTAAGGCGTATTTCTGCTGCTAAAGGAAGGGTTATTACAACTCAGTTCGCATCAAATATACATCGTCTTGGAAGTGTGAACGCTGCAGCTGATTTAACTGGTAGAAAGATGGTGTTTGTTGGCATGTCTCTACGAACATATCTAGATGCAGCTTGGAAGGATGGAAAGGCACCATTTGACCCATCCACGCTGGTGAAAGTGGAGGATATTGATGCTTATGCTCCTAAGGATTTGCTGATTGTAACAACTGGATCTCAGGCAGAACCTCGTGCTGCCCTGAATCTTGCATCATATGGTGGTAGTCATTCTTTCAAGCTGACCAAGGAAGATATAATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGATGAACCGCATAGCAGAGATTGGATCATCAATAATAATGGGGAAGAATGAGGGGCTGCACACATCGGGTCATGCGTATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCGCAACATTTTCTTCCCATACACGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAGTCAACTGGCATTCGACACACTGCTGTTATTAAGAATGGAGAGATGCTTGGCGTTTCACACTTAAGAAATAGAAGAGTCCTTTCAAATGGTTTTGTTTCCCTTGGAAAAGAGAATTTACAGTTGAAGTACAGTGATGGGGACAAAGCATTTGGTACATCAAGTGAACTTTTTGTTGATGAAAGATTGAGAATTGCCTTAGATGGAATAATTGTGGTCAGCATGGAAATATTCCGGCCTCAAAATAGTGAGAGTCATGTTGAAAACACCTTAAAAGGGAAGATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGAAAGCTGTTGGATGCGCTTCATAAGGCTGCTCATGCTGCACTTTCAAGCTGCCCAGTAAACTGTCCATTTTATCACATGGAAAGAACTGTATCTGAGGTATTGAGGAAGTTGGTGAGGAAGTATAGCGGCAAAAGACCAGAAGTTATTGCTATTGCTGTAGAAAACCCTGCAGCTGTTCTTGCTGATGAGGTAAAAGCGAGGCTGTCTGGAAAATCTCATATGGGTCTTGGGACACCATCGTTGAGAAAAATAGTGGATGGACGTAACGAGGAAAAGAAGTCCAGCAAAATGGCTATAAAAGAAGATGATGGCACTGATGTTGAAGGACTCCTACCAGAGGAAGATATCCCTACTCCAAGTGGAGCTGATGCTGACTCCCCTGATTCAGAGGATTCAGATGAATTTTGGAAATCAGTCATCACACCTTCAAGGGCTGAAAAGTCGATCAAAGCTAACAATGGTTATATTCCACGAAAGCAGCAAGAGTCCCAGCAGATGAAAGATGATTCTGGAGACTCTGAAGAAGGCGAGTCTGAACCCAAGCCTTCAAAAACAGTGAAGAGAAATAAATGGAAGCCTGAGGAAGTGAAGAAGCTGATCGATATGCGTGGAGAGCTGAACGAGAGATTTCAAGTTGTGAAGGGAAGAATGATCCTCTGGGAGGAGATATCTCAAAAGTTGTTGGCTGATGGTATCAACAGAAGTCCAGGGCAATGTAAATCTCTGTGGACTTCTTTGATACAAAAATACGAGGAGATCAAGAATGGGAAGAACAAGAAAGGCTGGCCATATCTGGAGGACATGGACAGGATATTGTCGGATAAGGAGGCGCGGGCAGCAAAATGA 2589 0.4264 MASCGSLSLCPYSLYRHPNPKRRPILCSAGSSSLVGIDGSKVPRKRLRKIEGPGKSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVVITHGHEDHIGALPWVIPALDTHTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFLAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDEQPLDGKVFDREVLEELSKEGVTLMMSDSTNILSPGRTISESTVADALLRRISAAKGRVITTQFASNIHRLGSVNAAADLTGRKMVFVGMSLRTYLDAAWKDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSFKLTKEDIILYSAKVIPGNESRVMKMMNRIAEIGSSIIMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFVSLGKENLQLKYSDGDKAFGTSSELFVDERLRIALDGIIVVSMEIFRPQNSESHVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPFYHMERTVSEVLRKLVRKYSGKRPEVIAIAVENPAAVLADEVKARLSGKSHMGLGTPSLRKIVDGRNEEKKSSKMAIKEDDGTDVEGLLPEEDIPTPSGADADSPDSEDSDEFWKSVITPSRAEKSIKANNGYIPRKQQESQQMKDDSGDSEEGESEPKPSKTVKRNKWKPEEVKKLIDMRGELNERFQVVKGRMILWEEISQKLLADGINRSPGQCKSLWTSLIQKYEEIKNGKNKKGWPYLEDMDRILSDKEARAAK 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00095 862 MobiDBLite consensus disorder prediction 652 774 - -
Pral4782g00095 862 Pfam Myb/SANT-like DNA-binding domain 769 852 IPR044822 -
Pral4782g00095 862 Pfam Metallo-beta-lactamase superfamily 90 234 IPR001279 -
Pral4782g00095 862 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Pral4782g00095 862 PANTHER RIBONUCLEASE J 1 862 - -
Pral4782g00095 862 Gene3D - 278 428 IPR042173 -
Pral4782g00095 862 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Pral4782g00095 862 ProSiteProfiles Myb-like domain profile. 764 828 IPR001005 -
Pral4782g00095 862 Gene3D - 772 833 - -
Pral4782g00095 862 CDD GT1 770 835 - -
Pral4782g00095 862 MobiDBLite consensus disorder prediction 743 774 - -
Pral4782g00095 862 Gene3D - 81 493 IPR036866 -
Pral4782g00095 862 SMART Lactamase_B_5a 89 286 IPR001279 -
Pral4782g00095 862 MobiDBLite consensus disorder prediction 665 687 - -
Pral4782g00095 862 SMART sant 768 830 IPR001005 -
Pral4782g00095 862 CDD RNaseJ_MBL-fold 80 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00095 Pral-Chr4782 744460 754900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00095 771 859 Trihelix Transcription Factor Family AT2G38250 34.783 5.80e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral4782g00095 Lactamase_B 7.2e-11 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00095 - - qsa:O6P43_022564 1380.16